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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LDA   limit dextrinase 
 ath-r.7   LDA   limit dextrinase 
 ath-m.9   LDA   limit dextrinase 
 ath-e.2   LDA   limit dextrinase 
 ath-m.4.bio   LDA   limit dextrinase 
 ath-m.4.hor   LDA   limit dextrinase 
 ath-m.4.lig   LDA   limit dextrinase 
 ath-m.4.str   LDA   limit dextrinase 
 ath-m.4.tis   LDA   limit dextrinase 
 bra-r.6   103847300   pullulanase 1, chloroplastic 
 bna-r.1   106372541   pullulanase 1, chloroplastic 
 bna-r.1   106372696   pullulanase 1, chloroplastic-like 
 ghi-r.1   107904350   pullulanase 1, chloroplastic 
 ghi-r.1   107904200   pullulanase 1, chloroplastic 
 cit-r.1   102625188   pullulanase 1, chloroplastic 
 gma-u.5   100780405   pullulanase 1, chloroplastic 
 vvi-u.5   100247866   pullulanase 1, chloroplastic 
 ppo-u.5   7468447   pullulanase 1, chloroplastic 
 mtr-u.5   25484818   pullulanase 1, chloroplastic 
 sly-u.5   101262883   pullulanase 1, chloroplastic 
 sot-r.1   102581262   pullulanase 1, chloroplastic 
 nta-r.1   107762742   pullulanase 1, chloroplastic 
 nta-r.1   107769155   pullulanase 1, chloroplastic 
 osa-u.5   4335042   pullulanase 1, chloroplastic 
 zma-u.5   541711   pullulanase-type starch debranching enzyme 1 
 tae-r.2   123166016   pullulanase 1, chloroplastic 
 tae-r.2   542875   pullulanase 1, chloroplastic 
 tae-r.2   123159322   pullulanase 1, chloroplastic 
 hvu-r.1   123406986   pullulanase 1, chloroplastic 
 sbi-r.1   8066007   pullulanase 1, chloroplastic 
 bdi-r.1   100831209   pullulanase 1, chloroplastic 
 cre-r.1   CHLRE_11g476650v5   uncharacterized protein 

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Top 50 coexpressed genes to LDA (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LDA (ath-u.5 coexpression data)

CoexMap"830315"


athLDA | Entrez gene ID : 830315      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0005983 [list] [network] starch catabolic process  (17 genes)  IMP TAS  
GO:0019252 [list] [network] starch biosynthetic process  (18 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO MF
GO:0010303 [list] [network] limit dextrinase activity  (1 genes)  IDA  
GO:0051060 [list] [network] pullulanase activity  (1 genes)  IDA  
Protein NP_001330089.1 [sequence] [blastp]
NP_196056.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_001330089.1)
chlo 9,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_196056.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001330089.1)
chlo 9  (predict for NP_196056.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LDA
ath-r.7
for
LDA
ath-m.9
for
LDA
ath-e.2
for
LDA
ath-m.4.bio
for
LDA
ath-m.4.hor
for
LDA
ath-m.4.lig
for
LDA
ath-m.4.str
for
LDA
ath-m.4.tis
for
LDA
bra-r.6
for
103847300
bna-r.1
for
106372541
bna-r.1
for
106372696
ghi-r.1
for
107904350
ghi-r.1
for
107904200
cit-r.1
for
102625188
gma-u.5
for
100780405
vvi-u.5
for
100247866
ppo-u.5
for
7468447
mtr-u.5
for
25484818
sly-u.5
for
101262883
sot-r.1
for
102581262
nta-r.1
for
107762742
nta-r.1
for
107769155
osa-u.5
for
4335042
zma-u.5
for
541711
tae-r.2
for
123166016
tae-r.2
for
542875
tae-r.2
for
123159322
hvu-r.1
for
123406986
sbi-r.1
for
8066007
bdi-r.1
for
100831209
cre-r.1
for
CHLRE_11g476650v5


Ortholog ID: 10914
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LDA LOC103847300 LOC106372541 LOC106372696 LOC107904350 LOC107904200 LOC102625188 LOC100780405 LOC100247866 LOC7468447 LOC25484818 LOC101262883 LOC102581262 LOC107762742 LOC107769155 LOC4335042 LOC541711 LOC123166016 LOC542875 LOC123159322 LOC123406986 LOC8066007 LOC100831209 CHLRE_11g476650v5
Function* limit dextrinase pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic-like pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase-type starch debranching enzyme 1 pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic pullulanase 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath00010 Glycolysis / Gluconeogenesis 2
ath00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 2
bna01230 Biosynthesis of amino acids 2
bna00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 2
bna01230 Biosynthesis of amino acids 2
bna00040 Pentose and glucuronate interconversions 2
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00260 Glycine, serine and threonine metabolism 2
gma00561 Glycerolipid metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 5
mtr04712 Circadian rhythm - plant 2
mtr00730 Thiamine metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 8
sot00520 Amino sugar and nucleotide sugar metabolism 2
sot01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 2
nta00730 Thiamine metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta00540 Lipopolysaccharide biosynthesis 2
nta00730 Thiamine metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 9
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00280 Valine, leucine and isoleucine degradation 7
zma01210 2-Oxocarboxylic acid metabolism 3
zma00640 Propanoate metabolism 2
zma00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 4
tae00030 Pentose phosphate pathway 4
tae00051 Fructose and mannose metabolism 3
tae04814 Motor proteins 3
tae00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00310 Lysine degradation 3
tae00220 Arginine biosynthesis 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 6
tae01200 Carbon metabolism 6
tae01230 Biosynthesis of amino acids 5
tae00051 Fructose and mannose metabolism 3
tae00562 Inositol phosphate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi00500 Starch and sucrose metabolism 2
bdi03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830315 103847300 106372541 106372696 107904350 107904200 102625188 100780405 100247866 7468447 25484818 101262883 102581262 107762742 107769155 4335042 541711 123166016 542875 123159322 123406986 8066007 100831209 5722864
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