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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G05230   RING/U-box superfamily protein 
 ath-r.7   AT5G05230   RING/U-box superfamily protein 
 ath-m.9   AT5G05230   RING/U-box superfamily protein 
 ath-e.2   AT5G05230   RING/U-box superfamily protein 
 ath-m.4.bio   AT5G05230   RING/U-box superfamily protein 
 ath-m.4.hor   AT5G05230   RING/U-box superfamily protein 
 ath-m.4.lig   AT5G05230   RING/U-box superfamily protein 
 ath-m.4.str   AT5G05230   RING/U-box superfamily protein 
 ath-m.4.tis   AT5G05230   RING/U-box superfamily protein 
 bra-r.6   103846877   U-box domain-containing protein 62 
 bna-r.1   106419006   U-box domain-containing protein 62 
 bna-r.1   106440666   U-box domain-containing protein 62 
 ghi-r.1   107962226   U-box domain-containing protein 62 
 ghi-r.1   107931604   U-box domain-containing protein 62 
 ghi-r.1   107940486   U-box domain-containing protein 62 
 cit-r.1   102611706   U-box domain-containing protein 62 
 gma-u.5   100786717   U-box domain-containing protein 62 
 gma-u.5   100791099   U-box domain-containing protein 62 
 vvi-u.5   100262140   U-box domain-containing protein 62 
 ppo-u.5   7459240   U-box domain-containing protein 62 
 mtr-u.5   25489827   U-box domain-containing protein 62 
 sly-u.5   101265926   U-box domain-containing protein 62 
 sot-r.1   102583941   U-box domain-containing protein 62 
 nta-r.1   107831406   U-box domain-containing protein 62 
 nta-r.1   107810525   U-box domain-containing protein 62 
 zma-u.5   100276216   uncharacterized LOC100276216 
 hvu-r.1   123452959   U-box domain-containing protein 62-like 
 sbi-r.1   8057388   U-box domain-containing protein 62 

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Top 50 coexpressed genes to AT5G05230 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G05230 (ath-u.5 coexpression data)

CoexMap"830405"


athAT5G05230 | Entrez gene ID : 830405      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta zma hvu sbi cre tae bdi osa
Paralog 9 1 2 3 1 2 1 1 1 1 1 2 1 1 1 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IEA  
Protein NP_196142.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  cyto 1  (predict for NP_196142.3)
Subcellular
localization
TargetP
other 7  (predict for NP_196142.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G05230
ath-r.7
for
AT5G05230
ath-m.9
for
AT5G05230
ath-e.2
for
AT5G05230
ath-m.4.bio
for
AT5G05230
ath-m.4.hor
for
AT5G05230
ath-m.4.lig
for
AT5G05230
ath-m.4.str
for
AT5G05230
ath-m.4.tis
for
AT5G05230
bra-r.6
for
103846877
bna-r.1
for
106419006
bna-r.1
for
106440666
ghi-r.1
for
107962226
ghi-r.1
for
107931604
ghi-r.1
for
107940486
cit-r.1
for
102611706
gma-u.5
for
100786717
gma-u.5
for
100791099
vvi-u.5
for
100262140
ppo-u.5
for
7459240
mtr-u.5
for
25489827
sly-u.5
for
101265926
sot-r.1
for
102583941
nta-r.1
for
107831406
nta-r.1
for
107810525
zma-u.5
for
100276216
hvu-r.1
for
123452959
sbi-r.1
for
8057388


Ortholog ID: 11996
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta zma hvu sbi
Symbol AT5G05230 LOC103846877 LOC106419006 LOC106440666 LOC107962226 LOC107940486 LOC107959336 LOC102611706 LOC100786717 LOC100791099 LOC100262140 LOC7459240 LOC25489827 LOC101265926 LOC102583941 LOC107831406 LOC107810525 LOC100276216 LOC123452959 LOC8057388
Function* RING/U-box superfamily protein U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 U-box domain-containing protein 62 uncharacterized LOC100276216 U-box domain-containing protein 62-like U-box domain-containing protein 62
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 3
bna04145 Phagosome 2
bna04148 Efferocytosis 2
bna04517 IgSF CAM signaling 2
bna04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04145 Phagosome 2
bna04148 Efferocytosis 2
bna04517 IgSF CAM signaling 2
bna04518 Integrin signaling 2
bna04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00770 Pantothenate and CoA biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00760 Nicotinate and nicotinamide metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
sbi04144 Endocytosis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830405 103846877 106419006 106440666 107962226 107940486 107959336 102611706 100786717 100791099 100262140 7459240 25489827 101265926 102583941 107831406 107810525 100276216 123452959 8057388
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