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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   NEDD1   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   NEDD1   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   NEDD1   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100785510   protein NEDD1 
 gma-u.5   100814451   protein NEDD1 
 vvi-u.5   100246247   protein NEDD1 
 vvi-u.5   100250597   protein NEDD1 
 ppo-u.5   7494462   protein NEDD1 
 mtr-u.5   11411297   protein NEDD1 
 sly-u.5   101257744   protein NEDD1 
 osa-u.5   4346565   protein NEDD1 
 zma-u.5   100279786   uncharacterized LOC100279786 

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Top 50 coexpressed genes to NEDD1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NEDD1 (ath-u.5 coexpression data)

CoexMap"830483"


athNEDD1 | Entrez gene ID : 830483      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032467 [list] [network] positive regulation of cytokinesis  (1 genes)  IMP  
GO:0010968 [list] [network] regulation of microtubule nucleation  (3 genes)  IEA  
GO:2000694 [list] [network] regulation of phragmoplast microtubule organization  (3 genes)  IMP  
GO:0060236 [list] [network] regulation of mitotic spindle organization  (9 genes)  IMP  
GO:0000919 [list] [network] cell plate assembly  (14 genes)  IMP  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO CC
GO:0005828 [list] [network] kinetochore microtubule  (7 genes)  IDA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO MF
GO:0140496 [list] [network] gamma-tubulin complex binding  (1 genes)  IEA  
Protein NP_001119176.1 [sequence] [blastp]
NP_196216.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001119176.1)
nucl 9  (predict for NP_196216.2)
Subcellular
localization
TargetP
other 6  (predict for NP_001119176.1)
other 6  (predict for NP_196216.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
NEDD1

.
ath-r.7
for
NEDD1

.
ath-e.2
for
NEDD1

.
gma-u.5
for
100785510

.
gma-u.5
for
100814451

.
vvi-u.5
for
100246247

.
vvi-u.5
for
100250597

.
ppo-u.5
for
7494462

.
mtr-u.5
for
11411297

.
sly-u.5
for
101257744

.
osa-u.5
for
4346565

.
zma-u.5
for
100279786

.


Ortholog ID: 6640
Species ath gma gma sly osa zma bra bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol NEDD1 LOC100785510 LOC100814451 LOC101257744 LOC4346565 LOC100279786 LOC103846945 LOC103870355 LOC100250597 LOC100246247 LOC7494462 LOC11411297 LOC123120945 LOC123103387 LOC123395541 LOC107935309 LOC107935327 LOC106452535 LOC111206521 CHLRE_13g565150v5 LOC110432693 LOC102593206 LOC102610508 LOC100824848 LOC107788393 LOC107775211
Function* Transducin/WD40 repeat-like superfamily protein protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 uncharacterized LOC100279786 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1-like protein NEDD1 uncharacterized protein protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1 protein NEDD1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 3
gma03420 Nucleotide excision repair 3
gma03430 Mismatch repair 3
gma03008 Ribosome biogenesis in eukaryotes 2
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 5
tae04144 Endocytosis 5
tae05100 Bacterial invasion of epithelial cells 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 5
tae04144 Endocytosis 4
tae05100 Bacterial invasion of epithelial cells 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04142 Lysosome 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03050 Proteasome 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830483 100785510 100814451 101257744 4346565 100279786 103846945 103870355 100250597 100246247 7494462 11411297 123120945 123103387 123395541 107935309 107935327 106452535 111206521 5719032 110432693 102593206 102610508 100824848 107788393 107775211
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