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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SNX1   sorting nexin 1 
 ath-r.7   SNX1   sorting nexin 1 
 ath-m.9   SNX1   sorting nexin 1 
 ath-e.2   SNX1   sorting nexin 1 
 ath-m.4.bio   SNX1   sorting nexin 1 
 ath-m.4.hor   SNX1   sorting nexin 1 
 ath-m.4.lig   SNX1   sorting nexin 1 
 ath-m.4.str   SNX1   sorting nexin 1 
 ath-m.4.tis   SNX1   sorting nexin 1 
 bra-r.6   103846958   sorting nexin 1 
 bna-r.1   106432228   sorting nexin 1 
 bna-r.1   125579096   sorting nexin 1-like 
 bna-r.1   106422664   sorting nexin 1-like 
 ghi-r.1   107934054   sorting nexin 1 
 ghi-r.1   107929793   sorting nexin 1 
 ghi-r.1   107899256   sorting nexin 1 
 cit-r.1   102613466   sorting nexin 1 
 gma-u.5   100804649   sorting nexin-1-like 
 gma-u.5   100777531   sorting nexin 1 
 vvi-u.5   100244258   sorting nexin 1 
 ppo-u.5   7467568   sorting nexin 1 
 ppo-u.5   7492244   sorting nexin 1 
 mtr-u.5   25483797   sorting nexin 1 
 sly-u.5   101246655   sorting nexin 1 
 sot-r.1   102594053   sorting nexin 1 
 nta-r.1   107774009   sorting nexin 1 
 osa-u.5   4324745   sorting nexin 1 
 zma-u.5   103650974   sorting nexin 1-like 
 zma-u.5   100194251   Sorting nexin 1 
 tae-r.2   123062692   sorting nexin 1 
 tae-r.2   123071510   sorting nexin 1 
 tae-r.2   123079844   sorting nexin 1 
 hvu-r.1   123444822   sorting nexin 1 
 sbi-r.1   8062363   sorting nexin 1 
 bdi-r.1   100834489   sorting nexin 1 
 cre-r.1   CHLRE_06g281050v5   uncharacterized protein 

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Top 50 coexpressed genes to SNX1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SNX1 (ath-u.5 coexpression data)

CoexMap"830501"


athSNX1 | Entrez gene ID : 830501      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 3 1 2 1 2 1 1 1 1 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04144 [list] [network] Endocytosis (156 genes)
GO BP
GO:0008333 [list] [network] endosome to lysosome transport  (4 genes)  ISS TAS  
GO:0006896 [list] [network] Golgi to vacuole transport  (9 genes)  IDA  
GO:0072659 [list] [network] protein localization to plasma membrane  (21 genes)  IDA  
GO:0006623 [list] [network] protein targeting to vacuole  (31 genes)  IMP  
GO:0009958 [list] [network] positive gravitropism  (41 genes)  IMP  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO CC
GO:0030904 [list] [network] retromer complex  (8 genes)  IDA ISS  
GO:0005771 [list] [network] multivesicular body  (14 genes)  IDA  
GO:0005768 [list] [network] endosome  (359 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0016020 [list] [network] membrane  (3740 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (19211 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_196232.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  cysk 1,  nucl 1,  mito 1,  cysk_plas 1  (predict for NP_196232.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for NP_196232.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SNX1
ath-r.7
for
SNX1
ath-m.9
for
SNX1
ath-e.2
for
SNX1
ath-m.4.bio
for
SNX1
ath-m.4.hor
for
SNX1
ath-m.4.lig
for
SNX1
ath-m.4.str
for
SNX1
ath-m.4.tis
for
SNX1
bra-r.6
for
103846958
bna-r.1
for
106432228
bna-r.1
for
125579096
bna-r.1
for
106422664
ghi-r.1
for
107934054
ghi-r.1
for
107929793
ghi-r.1
for
107899256
cit-r.1
for
102613466
gma-u.5
for
100804649
gma-u.5
for
100777531
vvi-u.5
for
100244258
ppo-u.5
for
7467568
ppo-u.5
for
7492244
mtr-u.5
for
25483797
sly-u.5
for
101246655
sot-r.1
for
102594053
nta-r.1
for
107774009
osa-u.5
for
4324745
zma-u.5
for
103650974
zma-u.5
for
100194251
tae-r.2
for
123062692
tae-r.2
for
123071510
tae-r.2
for
123079844
hvu-r.1
for
123444822
sbi-r.1
for
8062363
bdi-r.1
for
100834489
cre-r.1
for
CHLRE_06g281050v5


Ortholog ID: 7316
Species ath bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol SNX1 LOC103846958 LOC125579096 LOC106422664 LOC106350662 LOC107934054 LOC107899256 LOC107896333 LOC102613466 LOC100804649 LOC100777531 LOC100244258 LOC7467568 LOC7492244 LOC25483797 LOC101246655 LOC102594053 LOC107774009 LOC4324745 LOC103650974 LOC100194251 LOC123062692 LOC123071510 LOC123079844 LOC123444822 LOC8062363 LOC100834489 CHLRE_06g281050v5
Function* sorting nexin 1 sorting nexin 1 sorting nexin 1-like sorting nexin 1-like sorting nexin 1-like sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin-1-like sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1-like Sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 sorting nexin 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
ath03008 Ribosome biogenesis in eukaryotes 2
ath04712 Circadian rhythm - plant 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 3
bna04148 Efferocytosis 2
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 5
bna04120 Ubiquitin mediated proteolysis 5
bna04144 Endocytosis 3
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04130 SNARE interactions in vesicular transport 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04130 SNARE interactions in vesicular transport 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi04144 Endocytosis 2
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 3
cit00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 7
gma03060 Protein export 3
gma04145 Phagosome 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 13
gma04145 Phagosome 6
gma03060 Protein export 4
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 5
vvi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 9
mtr04141 Protein processing in endoplasmic reticulum 2
mtr00240 Pyrimidine metabolism 2
mtr01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
sot04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 4
osa04145 Phagosome 3
osa03060 Protein export 2
osa04141 Protein processing in endoplasmic reticulum 2
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 2
zma04141 Protein processing in endoplasmic reticulum 2
zma04144 Endocytosis 2
zma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae04144 Endocytosis 3
tae04626 Plant-pathogen interaction 3
tae03060 Protein export 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 7
tae04144 Endocytosis 3
tae03015 mRNA surveillance pathway 3
tae04382 Cornified envelope formation 3
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
hvu04145 Phagosome 3
hvu04144 Endocytosis 3
hvu04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 3
sbi03040 Spliceosome 2
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 5
cre03272 Virion - Hepatitis viruses 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830501 103846958 125579096 106422664 106350662 107934054 107899256 107896333 102613466 100804649 100777531 100244258 7467568 7492244 25483797 101246655 102594053 107774009 4324745 103650974 100194251 123062692 123071510 123079844 123444822 8062363 100834489 5720922
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