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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PAS2   Protein-tyrosine phosphatase-like, PTPLA 
 ath-r.7   PAS2   Protein-tyrosine phosphatase-like, PTPLA 
 ath-m.9   PAS2   Protein-tyrosine phosphatase-like, PTPLA 
 ath-e.2   PAS2   Protein-tyrosine phosphatase-like, PTPLA 
 ath-m.4.bio   PAS2   Protein-tyrosine phosphatase-like, PTPLA 
 ath-m.4.hor   PAS2   Protein-tyrosine phosphatase-like, PTPLA 
 ath-m.4.lig   PAS2   Protein-tyrosine phosphatase-like, PTPLA 
 ath-m.4.str   PAS2   Protein-tyrosine phosphatase-like, PTPLA 
 ath-m.4.tis   PAS2   Protein-tyrosine phosphatase-like, PTPLA 
 bra-r.6   103846802   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 
 bra-r.6   103855870   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 
 bna-r.1   125579071   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like 
 bna-r.1   106405914   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like 
 bna-r.1   106430302   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 
 ghi-r.1   121202797   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 
 ghi-r.1   107913394   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 
 cit-r.1   102610324   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A 
 gma-u.5   100527150   protein tyrosine phosphatase-like protein 
 gma-u.5   100818356   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A 
 vvi-u.5   100261741   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 
 ppo-u.5   7480190   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 
 mtr-u.5   25502888   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A 
 sly-u.5   101245050   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 
 sot-r.1   102591777   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 
 nta-r.1   107809738   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A 
 nta-r.1   107826616   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like 
 nta-r.1   107791219   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like 
 osa-u.5   107277374   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like 
 osa-u.5   9272625   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like 
 zma-u.5   100274548   uncharacterized LOC100274548 
 zma-u.5   100383128   uncharacterized LOC100383128 
 tae-r.2   123064820   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B 
 tae-r.2   123172493   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A 
 tae-r.2   123064819   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B 
 hvu-r.1   123445717   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like 
 hvu-r.1   123442697   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A 
 sbi-r.1   8060799   geranylgeranyl transferase type-1 subunit beta 
 bdi-r.1   112270679   uncharacterized LOC112270679 
 bdi-r.1   106866263   very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A 
 cre-r.1   CHLRE_03g167924v5   uncharacterized protein 

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Top 50 coexpressed genes to PAS2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAS2 (ath-u.5 coexpression data)

CoexMap"830912"


athPAS2 | Entrez gene ID : 830912      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 3 2 2 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00062 [list] [network] Fatty acid elongation (36 genes)
ath01040 [list] [network] Biosynthesis of unsaturated fatty acids (25 genes)
ath01212 [list] [network] Fatty acid metabolism (70 genes)
GO BP
GO:0050732 [list] [network] negative regulation of peptidyl-tyrosine phosphorylation  (1 genes)  IMP  
GO:0048640 [list] [network] negative regulation of developmental growth  (16 genes)  IMP  
GO:0042761 [list] [network] very long-chain fatty acid biosynthetic process  (18 genes)  IMP  
GO:0051302 [list] [network] regulation of cell division  (78 genes)  IMP  
GO:0030154 [list] [network] cell differentiation  (627 genes)  IMP  
GO CC
GO:0009923 [list] [network] fatty acid elongase complex  (2 genes)  IPI  
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0018812 [list] [network] 3-hydroxyacyl-CoA dehydratase activity  (3 genes)  IGI  
GO:0004725 [list] [network] protein tyrosine phosphatase activity  (12 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001078566.1 [sequence] [blastp]
NP_001190277.1 [sequence] [blastp]
NP_196610.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  cyto 2,  nucl 1,  plas 1,  nucl_plas 1,  cyto_E.R. 1  (predict for NP_001078566.1)
vacu 4,  extr 2,  E.R._vacu 2,  chlo 1  (predict for NP_001190277.1)
vacu 4,  extr 2,  chlo 1,  cyto 1,  mito 1,  plas 1,  E.R. 1,  chlo_mito 1,  E.R._plas 1,  mito_plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_196610.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001078566.1)
scret 7,  mito 6  (predict for NP_001190277.1)
scret 8,  mito 5  (predict for NP_196610.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PAS2
ath-r.7
for
PAS2
ath-m.9
for
PAS2
ath-e.2
for
PAS2
ath-m.4.bio
for
PAS2
ath-m.4.hor
for
PAS2
ath-m.4.lig
for
PAS2
ath-m.4.str
for
PAS2
ath-m.4.tis
for
PAS2
bra-r.6
for
103846802
bra-r.6
for
103855870
bna-r.1
for
125579071
bna-r.1
for
106405914
bna-r.1
for
106430302
ghi-r.1
for
121202797
ghi-r.1
for
107913394
cit-r.1
for
102610324
gma-u.5
for
100527150
gma-u.5
for
100818356
vvi-u.5
for
100261741
ppo-u.5
for
7480190
mtr-u.5
for
25502888
sly-u.5
for
101245050
sot-r.1
for
102591777
nta-r.1
for
107809738
nta-r.1
for
107826616
nta-r.1
for
107791219
osa-u.5
for
107277374
osa-u.5
for
9272625
zma-u.5
for
100274548
zma-u.5
for
100383128
tae-r.2
for
123064820
tae-r.2
for
123172493
tae-r.2
for
123064819
hvu-r.1
for
123445717
hvu-r.1
for
123442697
sbi-r.1
for
8060799
bdi-r.1
for
112270679
bdi-r.1
for
106866263
cre-r.1
for
CHLRE_03g167924v5


Ortholog ID: 2500
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa osa zma zma tae tae tae hvu hvu bdi bdi cre
Symbol PAS2 LOC103846802 LOC103855870 LOC125579071 LOC106405914 LOC106430302 LOC121202797 LOC107913394 LOC102610324 LOC100527150 LOC100818356 LOC100261741 LOC7480190 LOC25502888 LOC101245050 LOC102591777 LOC107809738 LOC107826616 LOC107791219 LOC107277374 LOC9272625 LOC100274548 LOC100383128 LOC123077160 LOC123134720 LOC123175950 LOC123445717 LOC123442697 LOC112270679 LOC106866263 CHLRE_03g167924v5
Function* Protein-tyrosine phosphatase-like, PTPLA very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A protein tyrosine phosphatase-like protein very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like uncharacterized LOC100274548 uncharacterized LOC100383128 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A uncharacterized LOC112270679 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00062 Fatty acid elongation 5
ath01212 Fatty acid metabolism 4
ath00564 Glycerophospholipid metabolism 3
ath04626 Plant-pathogen interaction 3
ath01040 Biosynthesis of unsaturated fatty acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00062 Fatty acid elongation 4
bra01212 Fatty acid metabolism 4
bra01040 Biosynthesis of unsaturated fatty acids 3
bra00073 Cutin, suberine and wax biosynthesis 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01212 Fatty acid metabolism 4
bra00062 Fatty acid elongation 3
bra01040 Biosynthesis of unsaturated fatty acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00062 Fatty acid elongation 9
bna01040 Biosynthesis of unsaturated fatty acids 9
bna01212 Fatty acid metabolism 9
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00062 Fatty acid elongation 9
bna01040 Biosynthesis of unsaturated fatty acids 9
bna01212 Fatty acid metabolism 9
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00062 Fatty acid elongation 9
bna01040 Biosynthesis of unsaturated fatty acids 7
bna01212 Fatty acid metabolism 7
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00062 Fatty acid elongation 9
ghi01040 Biosynthesis of unsaturated fatty acids 8
ghi01212 Fatty acid metabolism 8
ghi03040 Spliceosome 3
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00062 Fatty acid elongation 9
ghi01040 Biosynthesis of unsaturated fatty acids 8
ghi01212 Fatty acid metabolism 8
ghi03040 Spliceosome 3
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00062 Fatty acid elongation 6
gma01212 Fatty acid metabolism 5
gma01040 Biosynthesis of unsaturated fatty acids 4
gma00564 Glycerophospholipid metabolism 3
gma00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00062 Fatty acid elongation 6
gma01040 Biosynthesis of unsaturated fatty acids 6
gma01212 Fatty acid metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00062 Fatty acid elongation 3
vvi01040 Biosynthesis of unsaturated fatty acids 3
vvi01212 Fatty acid metabolism 3
vvi04145 Phagosome 2
vvi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01212 Fatty acid metabolism 8
ppo00062 Fatty acid elongation 5
ppo01040 Biosynthesis of unsaturated fatty acids 5
ppo00061 Fatty acid biosynthesis 3
ppo02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00062 Fatty acid elongation 4
mtr01040 Biosynthesis of unsaturated fatty acids 3
mtr01212 Fatty acid metabolism 3
mtr00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00564 Glycerophospholipid metabolism 5
sly00561 Glycerolipid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 6
sot04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00062 Fatty acid elongation 8
nta01212 Fatty acid metabolism 7
nta01040 Biosynthesis of unsaturated fatty acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00941 Flavonoid biosynthesis 5
nta00904 Diterpenoid biosynthesis 4
nta04712 Circadian rhythm - plant 3
nta00073 Cutin, suberine and wax biosynthesis 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00941 Flavonoid biosynthesis 4
nta00904 Diterpenoid biosynthesis 2
nta00073 Cutin, suberine and wax biosynthesis 2
nta04146 Peroxisome 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00062 Fatty acid elongation 6
osa01040 Biosynthesis of unsaturated fatty acids 4
osa01212 Fatty acid metabolism 4
osa00561 Glycerolipid metabolism 3
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 5
zma00062 Fatty acid elongation 4
zma01040 Biosynthesis of unsaturated fatty acids 4
zma01212 Fatty acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00062 Fatty acid elongation 4
zma01040 Biosynthesis of unsaturated fatty acids 4
zma01212 Fatty acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00062 Fatty acid elongation 17
tae01040 Biosynthesis of unsaturated fatty acids 13
tae01212 Fatty acid metabolism 13
tae04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00062 Fatty acid elongation 13
tae01040 Biosynthesis of unsaturated fatty acids 9
tae01212 Fatty acid metabolism 9
tae04626 Plant-pathogen interaction 4
tae00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00062 Fatty acid elongation 5
tae01040 Biosynthesis of unsaturated fatty acids 5
tae01212 Fatty acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01212 Fatty acid metabolism 2
hvu01240 Biosynthesis of cofactors 2
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00062 Fatty acid elongation 4
bdi01040 Biosynthesis of unsaturated fatty acids 4
bdi01212 Fatty acid metabolism 4
bdi00561 Glycerolipid metabolism 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830912 103846802 103855870 125579071 106405914 106430302 121202797 107913394 102610324 100527150 100818356 100261741 7480190 25502888 101245050 102591777 107809738 107826616 107791219 107277374 9272625 100274548 100383128 123077160 123134720 123175950 123445717 123442697 112270679 106866263 5728993
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