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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PPD5   PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 
 ath-r.7   PPD5   PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 
 ath-m.9   PPD5   PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 
 ath-e.2   PPD5   PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 
 ath-m.4.bio   PPD5   PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 
 ath-m.4.hor   PPD5   PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 
 ath-m.4.lig   PPD5   PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 
 ath-m.4.str   PPD5   PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 
 ath-m.4.tis   PPD5   PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 
 bra-r.6   103846717   psbP domain-containing protein 5, chloroplastic 
 bna-r.1   106372407   psbP domain-containing protein 5, chloroplastic-like 
 bna-r.1   106424575   psbP domain-containing protein 5, chloroplastic-like 
 ghi-r.1   121203170   psbP domain-containing protein 5, chloroplastic 
 ghi-r.1   121218264   psbP domain-containing protein 5, chloroplastic 
 ghi-r.1   107901380   psbP domain-containing protein 5, chloroplastic 
 cit-r.1   102628232   psbP domain-containing protein 5, chloroplastic 
 gma-u.5   100809891   psbP domain-containing protein 5, chloroplastic 
 gma-u.5   100776365   psbP domain-containing protein 5, chloroplastic-like 
 vvi-u.5   100252532   psbP domain-containing protein 5, chloroplastic 
 ppo-u.5   7471559   psbP domain-containing protein 5, chloroplastic 
 mtr-u.5   11423366   psbP domain-containing protein 5, chloroplastic 
 sly-u.5   101249944   psbP domain-containing protein 5, chloroplastic 
 sot-r.1   102582106   psbP domain-containing protein 5, chloroplastic 
 nta-r.1   107822395   psbP domain-containing protein 5, chloroplastic-like 
 nta-r.1   107782565   psbP domain-containing protein 5, chloroplastic 
 osa-u.5   4326610   psbP domain-containing protein 5, chloroplastic 
 zma-u.5   103651495   psbP domain-containing protein 5, chloroplastic 
 zma-u.5   100192838   uncharacterized LOC100192838 
 tae-r.2   123164230   probable calcium-binding protein CML8 
 tae-r.2   123156545   probable calcium-binding protein CML8 
 tae-r.2   123149440   psbP domain-containing protein 5, chloroplastic 
 hvu-r.1   123407647   psbP domain-containing protein 5, chloroplastic 
 sbi-r.1   110434184   psbP domain-containing protein 5, chloroplastic 
 bdi-r.1   100829804   psbP domain-containing protein 5, chloroplastic 
 cre-r.1   CHLRE_07g328200v5   uncharacterized protein 

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Top 50 coexpressed genes to PPD5 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PPD5 (ath-u.5 coexpression data)

CoexMap"831016"


athPPD5 | Entrez gene ID : 831016      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 1 1 1 1 2 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0031977 [list] [network] thylakoid lumen  (69 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
Protein NP_001331121.1 [sequence] [blastp]
NP_196706.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_001331121.1)
chlo 6,  mito 4  (predict for NP_196706.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001331121.1)
chlo 8,  mito 3  (predict for NP_196706.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PPD5
ath-r.7
for
PPD5
ath-m.9
for
PPD5
ath-e.2
for
PPD5
ath-m.4.bio
for
PPD5
ath-m.4.hor
for
PPD5
ath-m.4.lig
for
PPD5
ath-m.4.str
for
PPD5
ath-m.4.tis
for
PPD5
bra-r.6
for
103846717
bna-r.1
for
106372407
bna-r.1
for
106424575
ghi-r.1
for
121203170
ghi-r.1
for
121218264
ghi-r.1
for
107901380
cit-r.1
for
102628232
gma-u.5
for
100809891
gma-u.5
for
100776365
vvi-u.5
for
100252532
ppo-u.5
for
7471559
mtr-u.5
for
11423366
sly-u.5
for
101249944
sot-r.1
for
102582106
nta-r.1
for
107822395
nta-r.1
for
107782565
osa-u.5
for
4326610
zma-u.5
for
103651495
zma-u.5
for
100192838
tae-r.2
for
123164230
tae-r.2
for
123156545
tae-r.2
for
123149440
hvu-r.1
for
123407647
sbi-r.1
for
110434184
bdi-r.1
for
100829804
cre-r.1
for
CHLRE_07g328200v5


Ortholog ID: 9087
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol PPD5 LOC103846717 LOC106372407 LOC106424575 LOC121203170 LOC121218264 LOC107901380 LOC102628232 LOC100809891 LOC100776365 LOC100252532 LOC7471559 LOC11423366 LOC101249944 LOC102582106 LOC107822395 LOC107782565 LOC4326610 LOC103651495 LOC100192838 LOC123164230 LOC123156545 LOC123149440 LOC123407647 LOC110434184 LOC100829804 CHLRE_07g328200v5
Function* PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic-like psbP domain-containing protein 5, chloroplastic-like psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic-like psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic-like psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic uncharacterized LOC100192838 probable calcium-binding protein CML8 probable calcium-binding protein CML8 psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic psbP domain-containing protein 5, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
bna00860 Porphyrin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 2
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo00860 Porphyrin metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01232 Nucleotide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00053 Ascorbate and aldarate metabolism 3
tae00480 Glutathione metabolism 3
tae00860 Porphyrin metabolism 3
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00053 Ascorbate and aldarate metabolism 3
tae00480 Glutathione metabolism 3
tae00860 Porphyrin metabolism 3
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831016 103846717 106372407 106424575 121203170 121218264 107901380 102628232 100809891 100776365 100252532 7471559 11423366 101249944 102582106 107822395 107782565 4326610 103651495 100192838 123164230 123156545 123149440 123407647 110434184 100829804 5716218
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