ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT5G18760	RING/U-box superfamily protein
ath-r.7	AT5G18760	RING/U-box superfamily protein
ath-m.9	AT5G18760	RING/U-box superfamily protein
ath-e.2	AT5G18760	RING/U-box superfamily protein
ath-m.4.bio	AT5G18760	RING/U-box superfamily protein
ath-m.4.hor	AT5G18760	RING/U-box superfamily protein
ath-m.4.lig	AT5G18760	RING/U-box superfamily protein
ath-m.4.str	AT5G18760	RING/U-box superfamily protein
ath-m.4.tis	AT5G18760	RING/U-box superfamily protein
ath-u.5	AT3G06330	RING/U-box superfamily protein
ath-u.5	AT3G09760	RING/U-box superfamily protein
ath-u.5	AT5G03180	RING/U-box superfamily protein
gma-u.5	100527094	uncharacterized LOC100527094
gma-u.5	100791140	E3 ubiquitin-protein ligase MARCHF7
gma-u.5	100811800	uncharacterized LOC100811800
vvi-u.5	100265508	uncharacterized LOC100265508
vvi-u.5	100259554	uncharacterized LOC100259554
vvi-u.5	100257089	uncharacterized LOC100257089
ppo-u.5	18101707	uncharacterized LOC18101707
ppo-u.5	7491134	uncharacterized LOC7491134
ppo-u.5	18100205	uncharacterized LOC18100205
mtr-u.5	25484020	uncharacterized LOC25484020
mtr-u.5	11432594	E3 ubiquitin-protein ligase MARCHF8
sly-u.5	101249200	uncharacterized LOC101249200
sly-u.5	101249383	uncharacterized LOC101249383
sly-u.5	101256453	uncharacterized LOC101256453
osa-u.5	4334905	uncharacterized LOC4334905
osa-u.5	4328407	uncharacterized LOC4328407
osa-u.5	4341836	uncharacterized LOC4341836
zma-u.5	103627315	RING/U-box superfamily protein
zma-u.5	100304255	RING/U-box superfamily protein
zma-u.5	100281740	protein binding protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast	(5014 genes)	IDA ISM
GO:0005737 [list] [network] cytoplasm	(14000 genes)	IDA

GO MF

GO:0008270 [list] [network] zinc ion binding

(391 genes)

IEA

Protein

NP_001332719.1 [sequence] [blastp]
NP_197377.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 2, cyto 2, golg 2, cyto_nucl 2, chlo 1, nucl_plas 1, golg_plas 1, cyto_plas 1	(predict for NP_001332719.1)
cyto 3, plas 3, cyto_plas 3, chlo 2, cyto_nucl 2, nucl_plas 2	(predict for NP_197377.2)

Subcellular
localization
TargetP

chlo 8	(predict for NP_001332719.1)
chlo 8	(predict for NP_197377.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G18760	ath-r.7 for AT5G18760	ath-m.9 for AT5G18760	ath-e.2 for AT5G18760	ath-m.4.bio for AT5G18760	ath-m.4.hor for AT5G18760	ath-m.4.lig for AT5G18760	ath-m.4.str for AT5G18760	ath-m.4.tis for AT5G18760	ath-u.5 for AT3G06330	ath-u.5 for AT3G09760	ath-u.5 for AT5G03180	gma-u.5 for 100527094	gma-u.5 for 100791140	gma-u.5 for 100811800	vvi-u.5 for 100265508	vvi-u.5 for 100259554	vvi-u.5 for 100257089	ppo-u.5 for 18101707	ppo-u.5 for 7491134	ppo-u.5 for 18100205	mtr-u.5 for 25484020	mtr-u.5 for 11432594	sly-u.5 for 101249200	sly-u.5 for 101249383	sly-u.5 for 101256453	osa-u.5 for 4334905	osa-u.5 for 4328407	osa-u.5 for 4341836	zma-u.5 for 103627315	zma-u.5 for 100304255	zma-u.5 for 100281740

Ortholog

Ortholog ID: 514

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RING/U-box superfamily protein

uncharacterized LOC103849984

uncharacterized BNAC02G03310D

uncharacterized LOC107905294

uncharacterized LOC107944465

uncharacterized LOC102606695

uncharacterized LOC102619257

uncharacterized LOC100798208

E3 ubiquitin-protein ligase MARCHF11

uncharacterized LOC100265508

uncharacterized LOC100257089

uncharacterized LOC18102274

uncharacterized LOC7491134

uncharacterized LOC11446862

E3 ubiquitin-protein ligase MARCHF7

uncharacterized LOC101256453

uncharacterized LOC101265737

uncharacterized LOC102593861

uncharacterized LOC102596732

uncharacterized LOC107778310

uncharacterized LOC107783518

uncharacterized LOC4334905

uncharacterized LOC4341836

RING/U-box superfamily protein

uncharacterized LOC123149080

uncharacterized LOC123409809

uncharacterized LOC123403931

uncharacterized LOC8056949

uncharacterized LOC8066464

uncharacterized LOC100836924

ferredoxin-thioredoxin reductase catalytic chain, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00904	Diterpenoid biosynthesis	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	4
gma01200	Carbon metabolism	4
gma00941	Flavonoid biosynthesis	3
gma04712	Circadian rhythm - plant	3
gma00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00330	Arginine and proline metabolism	3
vvi01200	Carbon metabolism	2
vvi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00062	Fatty acid elongation	4
sly04626	Plant-pathogen interaction	4
sly04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00562	Inositol phosphate metabolism	3
zma04070	Phosphatidylinositol signaling system	3
zma04136	Autophagy - other	2
zma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00053	Ascorbate and aldarate metabolism	3
tae00480	Glutathione metabolism	3
tae00330	Arginine and proline metabolism	3
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00561	Glycerolipid metabolism	2
sbi00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	3
bdi01200	Carbon metabolism	2
bdi01210	2-Oxocarboxylic acid metabolism	2
bdi00480	Glutathione metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

836179

819807

103849984

106360582

107905294

107944465

102606695

102619257

100798208

100783117

100265508

100257089

18102274

7491134

11446862

11407485

101256453

101265737

102593861

102596732

107778310

107783518

4334905

4341836

103627315

100304255

123149080

123409809

123403931

8056949

8066464

100836924

100829821

5725554

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT5G18760 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G18760 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	12	3	3	3	2	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G18760 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G18760 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**