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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   NPH4   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 ath-r.7   NPH4   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 ath-m.9   NPH4   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 ath-e.2   NPH4   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 ath-m.4.bio   NPH4   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 ath-m.4.hor   NPH4   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 ath-m.4.lig   NPH4   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 ath-m.4.str   NPH4   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 ath-m.4.tis   NPH4   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 ath-u.5   ARF19   auxin response factor 19 
 bra-r.6   ARF19-1   auxin response factor 19 
 bra-r.6   ARF7-1   auxin response factor 7 
 bra-r.6   ARF7-2   auxin response factor 7 
 bna-r.1   106346979   auxin response factor 19 
 bna-r.1   106425782   auxin response factor 7 
 bna-r.1   106361960   auxin response factor 19 
 ghi-r.1   107901036   auxin response factor 7 
 ghi-r.1   121219224   auxin response factor 19 
 ghi-r.1   107962189   auxin response factor 7 
 cit-r.1   102628827   auxin response factor 19-like 
 gma-u.5   100805456   auxin response factor 19 
 gma-u.5   100804628   auxin response factor 19 
 gma-u.5   100816054   auxin response factor 19 
 vvi-u.5   100257618   auxin response factor 7 
 ppo-u.5   18100300   auxin response factor 19 
 ppo-u.5   7467924   auxin response factor 19 
 mtr-u.5   25486537   auxin response factor 19 
 mtr-u.5   11445778   auxin response factor 19 
 sly-u.5   ARF7   auxin response factor 19 
 sot-r.1   102594021   auxin response factor 7-like 
 nta-r.1   107831276   auxin response factor 19 
 nta-r.1   107822108   auxin response factor 19 
 osa-u.5   9270361   auxin response factor 16-like 
 zma-u.5   103637942   auxin response factor 16 
 tae-r.2   123163801   auxin response factor 16 
 tae-r.2   123163008   auxin response factor 16 
 tae-r.2   123146972   auxin response factor 16 
 hvu-r.1   123406960   auxin response factor 16 
 sbi-r.1   8065457   auxin response factor 16 
 bdi-r.1   100838160   auxin response factor 16 

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Top 50 coexpressed genes to NPH4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NPH4 (ath-u.5 coexpression data)

CoexMap"832196"


athNPH4 | Entrez gene ID : 832196      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 3 1 2 2 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04075 [list] [network] Plant hormone signal transduction (433 genes)
GO BP
GO:0090643 [list] [network] inflorescence phyllotactic patterning  (4 genes)  IGI  
GO:0010450 [list] [network] inflorescence meristem growth  (6 genes)  IGI  
GO:0009785 [list] [network] blue light signaling pathway  (22 genes)  IMP  
GO:0009638 [list] [network] phototropism  (26 genes)  IMP  
GO:1990110 [list] [network] callus formation  (29 genes)  IMP  
GO:0010311 [list] [network] lateral root formation  (61 genes)  IGI  
GO:0009630 [list] [network] gravitropism  (101 genes)  TAS  
GO:0048527 [list] [network] lateral root development  (131 genes)  IGI  
GO:0009723 [list] [network] response to ethylene  (170 genes)  IGI  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IMP  
GO:0040008 [list] [network] regulation of growth  (273 genes)  TAS  
GO:0009733 [list] [network] response to auxin  (344 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_568400.2 [sequence] [blastp]
NP_851046.1 [sequence] [blastp]
NP_851047.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  vacu 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_568400.2)
nucl 7,  cyto 1,  vacu 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_851046.1)
nucl 7,  cyto 1,  vacu 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_851047.1)
Subcellular
localization
TargetP
other 5,  chlo 5  (predict for NP_568400.2)
other 5,  chlo 5  (predict for NP_851046.1)
other 5,  chlo 5  (predict for NP_851047.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
NPH4
ath-r.7
for
NPH4
ath-m.9
for
NPH4
ath-e.2
for
NPH4
ath-m.4.bio
for
NPH4
ath-m.4.hor
for
NPH4
ath-m.4.lig
for
NPH4
ath-m.4.str
for
NPH4
ath-m.4.tis
for
NPH4
ath-u.5
for
ARF19
bra-r.6
for
ARF19-1
bra-r.6
for
ARF7-1
bra-r.6
for
ARF7-2
bna-r.1
for
106346979
bna-r.1
for
106425782
bna-r.1
for
106361960
ghi-r.1
for
107901036
ghi-r.1
for
121219224
ghi-r.1
for
107962189
cit-r.1
for
102628827
gma-u.5
for
100805456
gma-u.5
for
100804628
gma-u.5
for
100816054
vvi-u.5
for
100257618
ppo-u.5
for
18100300
ppo-u.5
for
7467924
mtr-u.5
for
25486537
mtr-u.5
for
11445778
sly-u.5
for
ARF7
sot-r.1
for
102594021
nta-r.1
for
107831276
nta-r.1
for
107822108
osa-u.5
for
9270361
zma-u.5
for
103637942
tae-r.2
for
123163801
tae-r.2
for
123163008
tae-r.2
for
123146972
hvu-r.1
for
123406960
sbi-r.1
for
8065457
bdi-r.1
for
100838160


Ortholog ID: 4788
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol NPH4 ARF19 ARF7-1 ARF7-2 ARF19-2 LOC106361960 LOC106401590 LOC106431859 LOC107958833 LOC107929914 LOC107907087 LOC102628827 LOC100805456 LOC100804628 LOC100815277 LOC100257618 LOC18100300 LOC7467924 LOC25486537 LOC11445778 ARF7 LOC102594021 LOC107831276 LOC107822108 LOC9270361 LOC103637942 LOC123163801 LOC123163008 LOC123146972 LOC123406960 LOC8065457 LOC100838160
Function* Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein auxin response factor 19 auxin response factor 7 auxin response factor 7 auxin response factor 19 auxin response factor 19 auxin response factor 19 auxin response factor 19 auxin response factor 19 auxin response factor 19 auxin response factor 19 auxin response factor 19-like auxin response factor 19 auxin response factor 19 auxin response factor 19 auxin response factor 7 auxin response factor 19 auxin response factor 19 auxin response factor 19 auxin response factor 19 auxin response factor 19 auxin response factor 7-like auxin response factor 19 auxin response factor 19 auxin response factor 16-like auxin response factor 16 auxin response factor 16 auxin response factor 16 auxin response factor 16 auxin response factor 16 auxin response factor 16 auxin response factor 16
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 5
ath04142 Lysosome 3
ath05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 5
ath03083 Polycomb repressive complex 3
ath03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00562 Inositol phosphate metabolism 3
bra04070 Phosphatidylinositol signaling system 3
bra04144 Endocytosis 3
bra04142 Lysosome 3
bra05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03040 Spliceosome 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 7
mtr04120 Ubiquitin mediated proteolysis 2
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00100 Steroid biosynthesis 2
osa00071 Fatty acid degradation 2
osa01212 Fatty acid metabolism 2
osa00600 Sphingolipid metabolism 2
osa04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 9
zma00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832196 838505 103845646 103851373 103872719 106361960 106401590 106431859 107958833 107929914 107907087 102628827 100805456 100804628 100815277 100257618 18100300 7467924 25486537 11445778 100191131 102594021 107831276 107822108 9270361 103637942 123163801 123163008 123146972 123406960 8065457 100838160
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