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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RAD5   DNA/RNA helicase protein 
 ath-r.7   RAD5   DNA/RNA helicase protein 
 ath-m.9   RAD5   DNA/RNA helicase protein 
 ath-e.2   RAD5   DNA/RNA helicase protein 
 ath-m.4.bio   RAD5   DNA/RNA helicase protein 
 ath-m.4.hor   RAD5   DNA/RNA helicase protein 
 ath-m.4.lig   RAD5   DNA/RNA helicase protein 
 ath-m.4.str   RAD5   DNA/RNA helicase protein 
 ath-m.4.tis   RAD5   DNA/RNA helicase protein 
 gma-u.5   100794452   DNA repair protein RAD5A 
 gma-u.5   100794558   DNA repair protein RAD5A 
 vvi-u.5   100246473   DNA repair protein RAD5A 
 ppo-u.5   18097999   DNA repair protein RAD5A 
 mtr-u.5   25487494   DNA repair protein RAD5A 
 sly-u.5   101267090   DNA repair protein RAD5A 
 osa-u.5   4329524   DNA repair protein RAD5A 
 zma-u.5   118471938   DNA repair protein RAD5A 
 zma-u.5   103653576   DNA repair protein RAD5A 

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Top 50 coexpressed genes to RAD5 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RAD5 (ath-u.5 coexpression data)

CoexMap"832338"


athRAD5 | Entrez gene ID : 832338      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045003 [list] [network] double-strand break repair via synthesis-dependent strand annealing  (6 genes)  IDA  
GO:0036297 [list] [network] interstrand cross-link repair  (9 genes)  IGI  
GO:0009294 [list] [network] DNA-mediated transformation  (26 genes)  IMP  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (43 genes)  IDA IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_197667.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 3,  chlo 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_197667.1)
Subcellular
localization
TargetP
other 7  (predict for NP_197667.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RAD5

.
ath-r.7
for
RAD5

.
ath-m.9
for
RAD5

.
ath-e.2
for
RAD5

.
ath-m.4.bio
for
RAD5

.
ath-m.4.hor
for
RAD5

.
ath-m.4.lig
for
RAD5

.
ath-m.4.str
for
RAD5

.
ath-m.4.tis
for
RAD5

.
gma-u.5
for
100794452

.
gma-u.5
for
100794558

.
vvi-u.5
for
100246473

.
ppo-u.5
for
18097999

.
mtr-u.5
for
25487494

.
sly-u.5
for
101267090

.
osa-u.5
for
4329524

.
zma-u.5
for
118471938

.
zma-u.5
for
103653576

.


Ortholog ID: 10320
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol RAD5 LOC100794452 LOC100794558 LOC101267090 LOC4329524 LOC118471938 LOC103653576 LOC103856528 LOC100246473 LOC18097999 LOC25487494 LOC123136292 LOC123132247 LOC123402780 LOC107941274 LOC107937695 LOC106419522 LOC106386926 LOC8057260 LOC102589663 LOC102614855 LOC100838307 LOC107769939 LOC107780498
Function* DNA/RNA helicase protein DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A-like DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A DNA repair protein RAD5A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 8
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 5
sly03440 Homologous recombination 3
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03460 Fanconi anemia pathway 2
zma03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 5
bra03430 Mismatch repair 3
bra03460 Fanconi anemia pathway 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 6
vvi03410 Base excision repair 4
vvi03420 Nucleotide excision repair 4
vvi03430 Mismatch repair 4
vvi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03440 Homologous recombination 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03430 Mismatch repair 4
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03430 Mismatch repair 4
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna00270 Cysteine and methionine metabolism 4
bna04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna00270 Cysteine and methionine metabolism 4
bna04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832338 100794452 100794558 101267090 4329524 118471938 103653576 103856528 100246473 18097999 25487494 123136292 123132247 123402780 107941274 107937695 106419522 106386926 8057260 102589663 102614855 100838307 107769939 107780498
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