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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   VIM3   Zinc finger (C3HC4-type RING finger) family protein 
 ath-r.7   VIM3   Zinc finger (C3HC4-type RING finger) family protein 
 ath-e.2   VIM3   Zinc finger (C3HC4-type RING finger) family protein 
 ath-u.5   ORTHL   ORTHRUS-like protein 
 ath-u.5   VIM1   Zinc finger (C3HC4-type RING finger) family protein 
 gma-u.5   100781044   E3 ubiquitin-protein ligase ORTHRUS 2 
 gma-u.5   100786796   E3 ubiquitin-protein ligase ORTHRUS 2 
 gma-u.5   100801535   E3 ubiquitin-protein ligase ORTHRUS 2 
 vvi-u.5   100267660   E3 ubiquitin-protein ligase ORTHRUS 2 
 ppo-u.5   7496528   E3 ubiquitin-protein ligase ORTHRUS 2 
 ppo-u.5   7482823   E3 ubiquitin-protein ligase ORTHRUS 2 
 mtr-u.5   11419655   E3 ubiquitin-protein ligase ORTHRUS 2 
 mtr-u.5   11416728   E3 ubiquitin-protein ligase ORTHRUS 2 
 sly-u.5   101264121   E3 ubiquitin-protein ligase ORTHRUS 2 
 osa-u.5   4337533   E3 ubiquitin-protein ligase ORTHRUS 2 
 zma-u.5   103632186   E3 ubiquitin-protein ligase ORTHRUS 2 
 zma-u.5   100501293   uncharacterized LOC100501293 
 zma-u.5   100384551   uncharacterized LOC100384551 

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Top 50 coexpressed genes to VIM3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VIM3 (ath-u.5 coexpression data)

CoexMap"833951"


athVIM3 | Entrez gene ID : 833951      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 5 3 1 2 2 1 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0044027 [list] [network] negative regulation of gene expression via chromosomal CpG island methylation  (11 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0010428 [list] [network] methyl-CpNpG binding  (8 genes)  IDA  
GO:0010429 [list] [network] methyl-CpNpN binding  (8 genes)  IDA  
GO:0008327 [list] [network] methyl-CpG binding  (20 genes)  IDA  
GO:0042393 [list] [network] histone binding  (50 genes)  ISS  
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
Protein NP_198771.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_198771.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_198771.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
VIM3
ath-r.7
for
VIM3
ath-e.2
for
VIM3
ath-u.5
for
ORTHL
ath-u.5
for
VIM1
gma-u.5
for
100781044
gma-u.5
for
100786796
gma-u.5
for
100801535
vvi-u.5
for
100267660
ppo-u.5
for
7496528
ppo-u.5
for
7482823
mtr-u.5
for
11419655
mtr-u.5
for
11416728
sly-u.5
for
101264121
osa-u.5
for
4337533
zma-u.5
for
103632186
zma-u.5
for
100501293
zma-u.5
for
100384551


Ortholog ID: 3357
Species ath ath bra bra bna bna ghi ghi cit cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol ORTHL VIM3 LOC103842200 LOC103837884 LOC111207201 LOC106368573 LOC107924488 LOC107941461 LOC102609711 LOC102631220 LOC100786796 LOC100781044 LOC100267660 LOC7496528 LOC7482823 LOC11419655 LOC11416728 LOC101264121 LOC102578387 LOC107818035 LOC107784870 LOC4337533 LOC100384551 LOC100501293 LOC123179777 LOC123102807 LOC123444806 LOC8066584 LOC100841332 CHLRE_03g163850v5
Function* ORTHRUS-like protein Zinc finger (C3HC4-type RING finger) family protein E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2-like E3 ubiquitin-protein ligase ORTHRUS 2-like E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2-like E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2-like E3 ubiquitin-protein ligase ORTHRUS 2-like E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 uncharacterized LOC100384551 uncharacterized LOC100501293 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2-like E3 ubiquitin-protein ligase ORTHRUS 2 E3 ubiquitin-protein ligase ORTHRUS 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 3
ath00270 Cysteine and methionine metabolism 2
ath03030 DNA replication 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 4
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03440 Homologous recombination 2
cit03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma03440 Homologous recombination 4
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
gma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 9
gma00240 Pyrimidine metabolism 3
gma01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 6
vvi00270 Cysteine and methionine metabolism 5
vvi00670 One carbon pool by folate 3
vvi01200 Carbon metabolism 3
vvi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 8
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 2
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00564 Glycerophospholipid metabolism 2
mtr00565 Ether lipid metabolism 2
mtr04144 Endocytosis 2
mtr03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00240 Pyrimidine metabolism 2
mtr01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 6
zma03440 Homologous recombination 3
zma00270 Cysteine and methionine metabolism 2
zma03420 Nucleotide excision repair 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
zma03083 Polycomb repressive complex 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03410 Base excision repair 5
tae00270 Cysteine and methionine metabolism 4
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 4
bdi00270 Cysteine and methionine metabolism 3
bdi03430 Mismatch repair 3
bdi03082 ATP-dependent chromatin remodeling 2
bdi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826420 833951 103842200 103837884 111207201 106368573 107924488 107941461 102609711 102631220 100786796 100781044 100267660 7496528 7482823 11419655 11416728 101264121 102578387 107818035 107784870 4337533 100384551 100501293 123179777 123102807 123444806 8066584 100841332 5729064
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