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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CAD1   phytochelatin synthase 1 (PCS1) 
 ath-r.7   CAD1   phytochelatin synthase 1 (PCS1) 
 ath-m.9   CAD1   phytochelatin synthase 1 (PCS1) 
 ath-e.2   CAD1   phytochelatin synthase 1 (PCS1) 
 ath-m.4.bio   CAD1   phytochelatin synthase 1 (PCS1) 
 ath-m.4.hor   CAD1   phytochelatin synthase 1 (PCS1) 
 ath-m.4.lig   CAD1   phytochelatin synthase 1 (PCS1) 
 ath-m.4.str   CAD1   phytochelatin synthase 1 (PCS1) 
 ath-m.4.tis   CAD1   phytochelatin synthase 1 (PCS1) 
 bra-r.6   103827929   glutathione gamma-glutamylcysteinyltransferase 1 
 bra-r.6   103839206   glutathione gamma-glutamylcysteinyltransferase 1-like 
 bra-r.6   103843677   glutathione gamma-glutamylcysteinyltransferase 2 
 bna-r.1   125577908   glutathione gamma-glutamylcysteinyltransferase 1-like 
 bna-r.1   106417894   glutathione gamma-glutamylcysteinyltransferase 1-like 
 bna-r.1   106417837   glutathione gamma-glutamylcysteinyltransferase 1-like 
 ghi-r.1   107922692   glutathione gamma-glutamylcysteinyltransferase 1 
 ghi-r.1   107922779   glutathione gamma-glutamylcysteinyltransferase 1 
 ghi-r.1   107937656   glutathione gamma-glutamylcysteinyltransferase 3 
 cit-r.1   102626992   glutathione gamma-glutamylcysteinyltransferase 3 
 cit-r.1   102628145   glutathione gamma-glutamylcysteinyltransferase 3-like 
 gma-u.5   PCS1   homo-phytochelatin synthase 
 gma-u.5   100782042   glutathione gamma-glutamylcysteinyltransferase 3 
 gma-u.5   100808418   glutathione gamma-glutamylcysteinyltransferase 1 
 vvi-u.5   100266944   glutathione gamma-glutamylcysteinyltransferase 1 
 ppo-u.5   7464424   glutathione gamma-glutamylcysteinyltransferase 1 
 ppo-u.5   7455714   glutathione gamma-glutamylcysteinyltransferase 3 
 mtr-u.5   25499284   glutathione gamma-glutamylcysteinyltransferase 3 
 mtr-u.5   25499283   glutathione gamma-glutamylcysteinyltransferase 1 
 sly-u.5   101251125   glutathione gamma-glutamylcysteinyltransferase 1 
 sot-r.1   102600824   glutathione gamma-glutamylcysteinyltransferase 1-like 
 sot-r.1   102580078   glutathione gamma-glutamylcysteinyltransferase 1-like 
 sot-r.1   102589889   glutathione gamma-glutamylcysteinyltransferase 1-like 
 nta-r.1   107820529   glutathione gamma-glutamylcysteinyltransferase 1-like 
 nta-r.1   107826728   glutathione gamma-glutamylcysteinyltransferase 1-like 
 osa-u.5   4338799   glutathione gamma-glutamylcysteinyltransferase 1 
 osa-u.5   4339838   glutathione gamma-glutamylcysteinyltransferase 1 
 zma-u.5   100382428   Glutathione gamma-glutamylcysteinyltransferase 2 
 tae-r.2   542834   glutathione gamma-glutamylcysteinyltransferase 1-like 
 tae-r.2   123158478   glutathione gamma-glutamylcysteinyltransferase 1-like 
 tae-r.2   123149751   glutathione gamma-glutamylcysteinyltransferase 1-like 
 hvu-r.1   123409717   glutathione gamma-glutamylcysteinyltransferase 1 
 sbi-r.1   8079537   glutathione gamma-glutamylcysteinyltransferase 1 
 sbi-r.1   8080495   glutathione gamma-glutamylcysteinyltransferase 1 
 bdi-r.1   100826819   glutathione gamma-glutamylcysteinyltransferase 1 
 cre-r.1   CHLRE_07g319500v5   uncharacterized protein 

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Top 50 coexpressed genes to CAD1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CAD1 (ath-u.5 coexpression data)

CoexMap"834430"


athCAD1 | Entrez gene ID : 834430      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 3 2 3 1 2 2 1 3 2 2 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0046938 [list] [network] phytochelatin biosynthetic process  (3 genes)  IMP  
GO:0042344 [list] [network] indole glucosinolate catabolic process  (5 genes)  IMP  
GO:0015700 [list] [network] arsenite transport  (8 genes)  IDA  
GO:0052544 [list] [network] defense response by callose deposition in cell wall  (16 genes)  IMP  
GO:0046685 [list] [network] response to arsenic-containing substance  (19 genes)  IDA IMP  
GO:0046686 [list] [network] response to cadmium ion  (81 genes)  IDA IMP  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IMP  
GO:0006950 [list] [network] response to stress  (3156 genes)  IEP  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0015446 [list] [network] ATPase-coupled arsenite transmembrane transporter activity  (2 genes)  IDA  
GO:0044604 [list] [network] ABC-type phytochelatin transporter activity  (2 genes)  IDA  
GO:0046870 [list] [network] cadmium ion binding  (2 genes)  IDA  
GO:0016756 [list] [network] glutathione gamma-glutamylcysteinyltransferase activity  (5 genes)  IDA IMP  
GO:0005507 [list] [network] copper ion binding  (134 genes)  IDA  
Protein NP_001332549.1 [sequence] [blastp]
NP_199220.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001332549.1)
chlo 5,  nucl 2,  mito 1,  cyto_mito 1,  cysk_nucl 1  (predict for NP_199220.1)
Subcellular
localization
TargetP
other 5,  scret 3  (predict for NP_001332549.1)
other 5  (predict for NP_199220.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CAD1
ath-r.7
for
CAD1
ath-m.9
for
CAD1
ath-e.2
for
CAD1
ath-m.4.bio
for
CAD1
ath-m.4.hor
for
CAD1
ath-m.4.lig
for
CAD1
ath-m.4.str
for
CAD1
ath-m.4.tis
for
CAD1
bra-r.6
for
103827929
bra-r.6
for
103839206
bra-r.6
for
103843677
bna-r.1
for
125577908
bna-r.1
for
106417894
bna-r.1
for
106417837
ghi-r.1
for
107922692
ghi-r.1
for
107922779
ghi-r.1
for
107937656
cit-r.1
for
102626992
cit-r.1
for
102628145
gma-u.5
for
PCS1
gma-u.5
for
100782042
gma-u.5
for
100808418
vvi-u.5
for
100266944
ppo-u.5
for
7464424
ppo-u.5
for
7455714
mtr-u.5
for
25499284
mtr-u.5
for
25499283
sly-u.5
for
101251125
sot-r.1
for
102600824
sot-r.1
for
102580078
sot-r.1
for
102589889
nta-r.1
for
107820529
nta-r.1
for
107826728
osa-u.5
for
4338799
osa-u.5
for
4339838
zma-u.5
for
100382428
tae-r.2
for
542834
tae-r.2
for
123158478
tae-r.2
for
123149751
hvu-r.1
for
123409717
sbi-r.1
for
8079537
sbi-r.1
for
8080495
bdi-r.1
for
100826819
cre-r.1
for
CHLRE_07g319500v5


Ortholog ID: 3150
Species ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo mtr mtr sly sot sot sot nta nta osa osa zma tae tae hvu sbi sbi bdi cre
Symbol CAD1 LOC103843677 LOC103848856 LOC103839325 LOC106417837 LOC106411423 LOC106387111 LOC107922692 LOC107922779 LOC107937656 LOC102628145 LOC102628437 PCS1 LOC100782042 LOC100808418 LOC100266944 LOC7464424 LOC7455714 LOC25499284 LOC25499283 LOC101251125 LOC102600824 LOC102580078 LOC102589889 LOC107820529 LOC107826728 LOC4338799 LOC4339838 LOC100382428 LOC542834 LOC123099057 LOC123409717 LOC8079537 LOC8080495 LOC100826819 CHLRE_07g319500v5
Function* phytochelatin synthase 1 (PCS1) glutathione gamma-glutamylcysteinyltransferase 2 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1-like glutathione gamma-glutamylcysteinyltransferase 1-like glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 3 glutathione gamma-glutamylcysteinyltransferase 3-like glutathione gamma-glutamylcysteinyltransferase 1-like homo-phytochelatin synthase glutathione gamma-glutamylcysteinyltransferase 3 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 3 glutathione gamma-glutamylcysteinyltransferase 3 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1-like glutathione gamma-glutamylcysteinyltransferase 1-like glutathione gamma-glutamylcysteinyltransferase 1-like glutathione gamma-glutamylcysteinyltransferase 1-like glutathione gamma-glutamylcysteinyltransferase 1-like glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1 Glutathione gamma-glutamylcysteinyltransferase 2 glutathione gamma-glutamylcysteinyltransferase 1-like glutathione gamma-glutamylcysteinyltransferase 1-like glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1 glutathione gamma-glutamylcysteinyltransferase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 3
bra04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 2
bna00460 Cyanoamino acid metabolism 2
bna00500 Starch and sucrose metabolism 2
bna00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 2
bna00460 Cyanoamino acid metabolism 2
bna00500 Starch and sucrose metabolism 2
bna00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 2
bna00460 Cyanoamino acid metabolism 2
bna00500 Starch and sucrose metabolism 2
bna00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03013 Nucleocytoplasmic transport 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 3
ppo00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 3
mtr00620 Pyruvate metabolism 2
mtr00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 10
zma01230 Biosynthesis of amino acids 8
zma00010 Glycolysis / Gluconeogenesis 6
zma00030 Pentose phosphate pathway 4
zma00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00564 Glycerophospholipid metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834430 103843677 103848856 103839325 106417837 106411423 106387111 107922692 107922779 107937656 102628145 102628437 547627 100782042 100808418 100266944 7464424 7455714 25499284 25499283 101251125 102600824 102580078 102589889 107820529 107826728 4338799 4339838 100382428 542834 123099057 123409717 8079537 8080495 100826819 5726569
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