ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	SSP4	SCP1-like small phosphatase 4
ath-r.7	SSP4	SCP1-like small phosphatase 4
ath-m.9	SSP4	SCP1-like small phosphatase 4
ath-e.2	SSP4	SCP1-like small phosphatase 4
ath-m.4.bio	SSP4	SCP1-like small phosphatase 4
ath-m.4.hor	SSP4	SCP1-like small phosphatase 4
ath-m.4.lig	SSP4	SCP1-like small phosphatase 4
ath-m.4.str	SSP4	SCP1-like small phosphatase 4
ath-m.4.tis	SSP4	SCP1-like small phosphatase 4
ath-u.5	SSP4b	SCP1-like small phosphatase 4b
bra-r.6	103827734	CTD small phosphatase-like protein 2
bna-r.1	106400665	CTD small phosphatase-like protein 2
bna-r.1	106410351	CTD small phosphatase-like protein 2
ghi-r.1	107901835	uncharacterized LOC107901835
ghi-r.1	107913144	CTD small phosphatase-like protein 2
ghi-r.1	107935915	CTD small phosphatase-like protein 2
cit-r.1	102616146	uncharacterized LOC102616146
cit-r.1	102608270	uncharacterized LOC102608270
cit-r.1	102629071	uncharacterized LOC102629071
gma-u.5	100799803	CTD small phosphatase-like protein 2
gma-u.5	100786602	CTD small phosphatase-like protein 2
vvi-u.5	100267967	uncharacterized LOC100267967
vvi-u.5	100258847	uncharacterized LOC100258847
ppo-u.5	7471836	phosphatase PSR1
ppo-u.5	18095283	phosphatase PSR1
mtr-u.5	11411659	CTD small phosphatase-like protein
sly-u.5	101254863	uncharacterized LOC101254863
sot-r.1	102588927	CTD small phosphatase-like protein 2
nta-r.1	107796847	uncharacterized LOC107796847
nta-r.1	107789826	uncharacterized LOC107789826
osa-u.5	4326666	uncharacterized LOC4326666
osa-u.5	4326854	CTD small phosphatase-like protein 2
zma-u.5	103651391	SCP1-like small phosphatase 4b
zma-u.5	100381584	SCP1-like small phosphatase 4b
zma-u.5	100283041	CTD-phosphatase-like protein
tae-r.2	123078744	CTD small phosphatase-like protein 2-A
tae-r.2	123078623	CTD small phosphatase-like protein 2
tae-r.2	123070180	CTD nuclear envelope phosphatase 1
hvu-r.1	123443925	CTD small phosphatase-like protein 2
hvu-r.1	123444039	CTD small phosphatase-like protein 2
sbi-r.1	8084875	CTD small phosphatase-like protein 3
sbi-r.1	110433936	uncharacterized LOC110433936
bdi-r.1	100830008	CTD small phosphatase-like protein 2
bdi-r.1	100822852	uncharacterized LOC100822852

Top 50 coexpressed genes to SSP4 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to SSP4 (ath-u.5 coexpression data)

CoexMap"834684"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006470 [list] [network] protein dephosphorylation

(41 genes)

IDA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA ISM

GO MF

GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity

(4 genes)

IDA

Protein

NP_001119383.1 [sequence] [blastp]
NP_001332006.1 [sequence] [blastp]
NP_199453.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, chlo 1, mito 1, cysk 1, chlo_mito 1, golg_plas 1	(predict for NP_001119383.1)
cyto 4, nucl 3, chlo 1, mito 1, cysk 1, chlo_mito 1, golg_plas 1	(predict for NP_001332006.1)
cyto 4, nucl 3, chlo 1, mito 1, cysk 1, chlo_mito 1, golg_plas 1	(predict for NP_199453.2)

Subcellular
localization
TargetP

other 6	(predict for NP_001119383.1)
other 6	(predict for NP_001332006.1)
other 6	(predict for NP_199453.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for SSP4	ath-r.7 for SSP4	ath-m.9 for SSP4	ath-e.2 for SSP4	ath-m.4.bio for SSP4	ath-m.4.hor for SSP4	ath-m.4.lig for SSP4	ath-m.4.str for SSP4	ath-m.4.tis for SSP4	ath-u.5 for SSP4b	bra-r.6 for 103827734	bna-r.1 for 106400665	bna-r.1 for 106410351	ghi-r.1 for 107901835	ghi-r.1 for 107913144	ghi-r.1 for 107935915	cit-r.1 for 102616146	cit-r.1 for 102608270	cit-r.1 for 102629071	gma-u.5 for 100799803	gma-u.5 for 100786602	vvi-u.5 for 100267967	vvi-u.5 for 100258847	ppo-u.5 for 7471836	ppo-u.5 for 18095283	mtr-u.5 for 11411659	sly-u.5 for 101254863	sot-r.1 for 102588927	nta-r.1 for 107796847	nta-r.1 for 107789826	osa-u.5 for 4326666	osa-u.5 for 4326854	zma-u.5 for 103651391	zma-u.5 for 100381584	zma-u.5 for 100283041	tae-r.2 for 123078744	tae-r.2 for 123078623	tae-r.2 for 123070180	hvu-r.1 for 123443925	hvu-r.1 for 123444039	sbi-r.1 for 8084875	sbi-r.1 for 110433936	bdi-r.1 for 100830008	bdi-r.1 for 100822852

Ortholog

Ortholog ID: 4944

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SSP4

SSP4b

Function^*

SCP1-like small phosphatase 4

SCP1-like small phosphatase 4b