ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT5G47920	transcription elongation factor
ath-r.7	AT5G47920	transcription elongation factor
ath-m.9	AT5G47920	transcription elongation factor
ath-e.2	AT5G47920	transcription elongation factor
ath-m.4.bio	AT5G47920	transcription elongation factor
ath-m.4.hor	AT5G47920	transcription elongation factor
ath-m.4.lig	AT5G47920	transcription elongation factor
ath-m.4.str	AT5G47920	transcription elongation factor
ath-m.4.tis	AT5G47920	transcription elongation factor
ath-u.5	AT5G13880	cotton fiber protein
bra-r.6	103846532	uncharacterized LOC103846532
bra-r.6	103837235	uncharacterized LOC103837235
bra-r.6	103854510	uncharacterized LOC103854510
bna-r.1	BNAC07G49270D	uncharacterized BNAC07G49270D
bna-r.1	BNAC02G38310D	uncharacterized BNAC02G38310D
ghi-r.1	107946211	uncharacterized LOC107946211
ghi-r.1	121210955	uncharacterized LOC121210955
ghi-r.1	107949752	uncharacterized LOC107949752
cit-r.1	102612020	uncharacterized LOC102612020
cit-r.1	102624355	hypothetical protein
gma-u.5	100807332	uncharacterized LOC100807332
gma-u.5	100781263	uncharacterized LOC100781263
gma-u.5	100780939	uncharacterized LOC100780939
vvi-u.5	100253147	uncharacterized LOC100253147
vvi-u.5	100267772	uncharacterized LOC100267772
ppo-u.5	7457997	uncharacterized LOC7457997
mtr-u.5	11431449	uncharacterized LOC11431449
mtr-u.5	11435740	uncharacterized LOC11435740
sly-u.5	101252722	uncharacterized LOC101252722
sot-r.1	102593407	uncharacterized LOC102593407
nta-r.1	107769451	uncharacterized LOC107769451
osa-u.5	4329435	uncharacterized LOC4329435
osa-u.5	4335641	uncharacterized LOC4335641
zma-u.5	100276179	uncharacterized LOC100276179
tae-r.2	123045292	uncharacterized LOC123045292
tae-r.2	123154753	uncharacterized LOC123154753
tae-r.2	123185423	uncharacterized LOC123185423
hvu-r.1	123430198	uncharacterized LOC123430198
sbi-r.1	8070785	uncharacterized LOC8070785
bdi-r.1	100835173	uncharacterized LOC100835173
bdi-r.1	100826669	uncharacterized LOC100826669

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

NP_199603.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, nucl 1, mito 1

(predict for NP_199603.1)

Subcellular
localization
TargetP

scret 4

(predict for NP_199603.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G47920	ath-r.7 for AT5G47920	ath-m.9 for AT5G47920	ath-e.2 for AT5G47920	ath-m.4.bio for AT5G47920	ath-m.4.hor for AT5G47920	ath-m.4.lig for AT5G47920	ath-m.4.str for AT5G47920	ath-m.4.tis for AT5G47920	ath-u.5 for AT5G13880	bra-r.6 for 103846532	bra-r.6 for 103837235	bra-r.6 for 103854510	bna-r.1 for BNAC07G49270D	bna-r.1 for BNAC02G38310D	ghi-r.1 for 107946211	ghi-r.1 for 121210955	ghi-r.1 for 107949752	cit-r.1 for 102612020	cit-r.1 for 102624355	gma-u.5 for 100807332	gma-u.5 for 100781263	gma-u.5 for 100780939	vvi-u.5 for 100253147	vvi-u.5 for 100267772	ppo-u.5 for 7457997	mtr-u.5 for 11431449	mtr-u.5 for 11435740	sly-u.5 for 101252722	sot-r.1 for 102593407	nta-r.1 for 107769451	osa-u.5 for 4329435	osa-u.5 for 4335641	zma-u.5 for 100276179	tae-r.2 for 123045292	tae-r.2 for 123154753	tae-r.2 for 123185423	hvu-r.1 for 123430198	sbi-r.1 for 8070785	bdi-r.1 for 100835173	bdi-r.1 for 100826669

Ortholog

Ortholog ID: 3380

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

transcription elongation factor

cotton fiber protein

uncharacterized LOC103846532

uncharacterized LOC103837235

uncharacterized LOC103874918

uncharacterized BNAC02G38310D

uncharacterized LOC111208242

uncharacterized LOC106370594

uncharacterized LOC121210955

uncharacterized LOC107888146

uncharacterized LOC102612020

hypothetical protein

uncharacterized LOC100807332

uncharacterized LOC100781263

uncharacterized LOC100780939

uncharacterized LOC100253147

uncharacterized LOC100267772

uncharacterized LOC7457997

uncharacterized LOC11431449

uncharacterized LOC11435740

uncharacterized LOC101252722

uncharacterized LOC102593407

uncharacterized LOC107769451

uncharacterized LOC4329435

uncharacterized LOC4335641

uncharacterized LOC100276179

uncharacterized LOC123154753

uncharacterized LOC123185423

uncharacterized LOC123159108

uncharacterized LOC123430198

uncharacterized LOC8070785

uncharacterized LOC100835173

uncharacterized LOC100826669

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	6
ppo04016	MAPK signaling pathway - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	8
sbi03060	Protein export	2
sbi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

834843

831235

103846532

103837235

103874918

106429002

111208242

106370594

121210955

107888146

102612020

102624355

100807332

100781263

100780939

100253147

100267772

7457997

11431449

11435740

101252722

102593407

107769451

4329435

4335641

100276179

123154753

123185423

123159108

123430198

8070785

100835173

100826669

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT5G47920 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G47920 (ath-u.5 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	2	3	2	3	2	1	2	1	1	1	2	1	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G47920 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G47920 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**