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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G48655   RING/U-box superfamily protein 
 ath-r.7   AT5G48655   RING/U-box superfamily protein 
 ath-m.9   AT5G48655   RING/U-box superfamily protein 
 ath-e.2   AT5G48655   RING/U-box superfamily protein 
 ath-m.4.bio   AT5G48655   RING/U-box superfamily protein 
 ath-m.4.hor   AT5G48655   RING/U-box superfamily protein 
 ath-m.4.lig   AT5G48655   RING/U-box superfamily protein 
 ath-m.4.str   AT5G48655   RING/U-box superfamily protein 
 ath-m.4.tis   AT5G48655   RING/U-box superfamily protein 
 ath-u.5   AT3G07200   RING/U-box superfamily protein 
 gma-u.5   100792853   E3 ubiquitin-protein ligase RNF4 
 gma-u.5   100306616   uncharacterized LOC100306616 
 gma-u.5   100778432   E3 ubiquitin-protein ligase RNF4 
 vvi-u.5   100246586   uncharacterized LOC100246586 
 vvi-u.5   100262402   uncharacterized LOC100262402 
 ppo-u.5   7463430   uncharacterized LOC7463430 
 ppo-u.5   18096550   uncharacterized LOC18096550 
 mtr-u.5   112416066   E3 ubiquitin-protein ligase RNF8 
 sly-u.5   101256594   uncharacterized LOC101256594 
 sly-u.5   101249295   uncharacterized LOC101249295 
 osa-u.5   4324365   uncharacterized LOC4324365 
 osa-u.5   107276681   uncharacterized LOC107276681 
 osa-u.5   4347500   E3 ubiquitin-protein ligase RNF4 
 zma-u.5   100502508   RING/U-box superfamily protein 
 zma-u.5   100194198   RING/U-box superfamily protein 
 zma-u.5   100282619   ubiquitin-protein ligase/ zinc ion binding protein 

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Top 50 coexpressed genes to AT5G48655 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G48655 (ath-u.5 coexpression data)

CoexMap"834923"


athAT5G48655 | Entrez gene ID : 834923      
Species ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 10 3 2 2 1 2 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  IGI  
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0032183 [list] [network] SUMO binding  (14 genes)  IPI  
Protein NP_001318762.1 [sequence] [blastp]
NP_001332107.1 [sequence] [blastp]
NP_001332108.1 [sequence] [blastp]
NP_568701.1 [sequence] [blastp]
NP_851156.1 [sequence] [blastp]
NP_974908.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  plas 2,  chlo_mito 2,  nucl_plas 2  (predict for NP_001318762.1)
chlo 4,  nucl 2,  plas 2,  chlo_mito 2,  nucl_plas 2  (predict for NP_001332107.1)
chlo 4,  nucl 2,  plas 2,  chlo_mito 2,  nucl_plas 2  (predict for NP_001332108.1)
chlo 4,  nucl 2,  plas 2,  chlo_mito 2,  nucl_plas 2  (predict for NP_568701.1)
chlo 4,  nucl 2,  plas 2,  chlo_mito 2,  nucl_plas 2  (predict for NP_851156.1)
chlo 4,  nucl 2,  plas 2,  chlo_mito 2,  nucl_plas 2  (predict for NP_974908.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for NP_001318762.1)
other 7,  mito 4  (predict for NP_001332107.1)
other 7,  mito 4  (predict for NP_001332108.1)
other 7,  mito 4  (predict for NP_568701.1)
other 7,  mito 4  (predict for NP_851156.1)
other 7,  mito 4  (predict for NP_974908.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G48655

.
ath-r.7
for
AT5G48655

.
ath-m.9
for
AT5G48655

.
ath-e.2
for
AT5G48655

.
ath-m.4.bio
for
AT5G48655

.
ath-m.4.hor
for
AT5G48655

.
ath-m.4.lig
for
AT5G48655

.
ath-m.4.str
for
AT5G48655

.
ath-m.4.tis
for
AT5G48655

.
ath-u.5
for
AT3G07200

.
gma-u.5
for
100792853

.
gma-u.5
for
100306616

.
gma-u.5
for
100778432

.
vvi-u.5
for
100246586

.
vvi-u.5
for
100262402

.
ppo-u.5
for
7463430

.
ppo-u.5
for
18096550

.
mtr-u.5
for
112416066

.
sly-u.5
for
101256594

.
sly-u.5
for
101249295

.
osa-u.5
for
4324365

.
osa-u.5
for
107276681

.
osa-u.5
for
4347500

.
zma-u.5
for
100502508

.
zma-u.5
for
100194198

.
zma-u.5
for
100282619

.


Ortholog ID: 1384
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit cit bdi bdi nta nta
Symbol AT5G48655 AT3G07200 LOC100792853 LOC100306616 LOC101249295 LOC101256594 LOC4324365 LOC4347500 LOC100194198 LOC100502508 LOC103837260 LOC103874974 LOC100262402 LOC100246586 LOC7463430 LOC18096550 LOC112416066 LOC100682522 LOC123104288 LOC123399707 LOC107924480 LOC107955252 LOC106410811 LOC106365804 LOC8058967 LOC8059363 LOC102601266 LOC102607650 LOC102621355 LOC104583742 LOC100845167 LOC107805214 LOC107827757
Function* RING/U-box superfamily protein RING/U-box superfamily protein E3 ubiquitin-protein ligase RNF4 uncharacterized LOC100306616 uncharacterized LOC101249295 uncharacterized LOC101256594 uncharacterized LOC4324365 E3 ubiquitin-protein ligase RNF4 RING/U-box superfamily protein RING/U-box superfamily protein E3 ubiquitin-protein ligase RNF4 probable E3 ubiquitin-protein ligase DTX3 uncharacterized LOC100262402 uncharacterized LOC100246586 uncharacterized LOC7463430 uncharacterized LOC18096550 E3 ubiquitin-protein ligase RNF8 E3 ubiquitin-protein ligase BRE1A E3 ubiquitin-protein ligase RNF4 E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8-like E3 ubiquitin-protein ligase RNF4 E3 ubiquitin-protein ligase RNF4 E3 ubiquitin-protein ligase RNF4 E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 E3 ubiquitin-protein ligase RNF4 E3 ubiquitin-protein ligase RNF4 E3 ubiquitin-protein ligase RNF4-like uncharacterized LOC102607650 E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8-like E3 ubiquitin-protein ligase RNF4 E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 uncharacterized LOC107805214 uncharacterized LOC107827757
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
ath04120 Ubiquitin mediated proteolysis 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00541 Biosynthesis of various nucleotide sugars 2
ath01250 Biosynthesis of nucleotide sugars 2
ath00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 2
gma01232 Nucleotide metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 3
osa04148 Efferocytosis 3
osa04130 SNARE interactions in vesicular transport 2
osa04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma04075 Plant hormone signal transduction 2
zma03022 Basal transcription factors 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo04120 Ubiquitin mediated proteolysis 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi04626 Plant-pathogen interaction 6
ghi04144 Endocytosis 2
ghi04016 MAPK signaling pathway - plant 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 4
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi03040 Spliceosome 2
sbi03250 Viral life cycle - HIV-1 2
sbi03272 Virion - Hepatitis viruses 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi04120 Ubiquitin mediated proteolysis 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834923 819908 100792853 100306616 101249295 101256594 4324365 4347500 100194198 100502508 103837260 103874974 100262402 100246586 7463430 18096550 112416066 100682522 123104288 123399707 107924480 107955252 106410811 106365804 8058967 8059363 102601266 102607650 102621355 104583742 100845167 107805214 107827757
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