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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G50970   transducin family protein / WD-40 repeat family protein 
 ath-r.7   AT5G50970   transducin family protein / WD-40 repeat family protein 
 ath-e.2   AT5G50970   transducin family protein / WD-40 repeat family protein 
 gma-u.5   102662882   U5 small nuclear ribonucleoprotein 40 kDa protein 
 gma-u.5   100799587   U5 small nuclear ribonucleoprotein 40 kDa protein 
 vvi-u.5   100255948   uncharacterized LOC100255948 
 ppo-u.5   7484887   uncharacterized LOC7484887 
 mtr-u.5   11421285   uncharacterized LOC11421285 
 sly-u.5   101251159   uncharacterized LOC101251159 
 sly-u.5   101247512   uncharacterized LOC101247512 
 osa-u.5   4334804   uncharacterized LOC4334804 
 zma-u.5   103625714   U5 small nuclear ribonucleoprotein 40 kDa protein 
 zma-u.5   100273721   uncharacterized LOC100273721 

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Top 50 coexpressed genes to AT5G50970 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G50970 (ath-u.5 coexpression data)

CoexMap"835170"


athAT5G50970 | Entrez gene ID : 835170      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_199910.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_199910.2)
Subcellular
localization
TargetP
other 9  (predict for NP_199910.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G50970

.
ath-r.7
for
AT5G50970

.
ath-e.2
for
AT5G50970

.
gma-u.5
for
102662882

.
gma-u.5
for
100799587

.
vvi-u.5
for
100255948

.
ppo-u.5
for
7484887

.
mtr-u.5
for
11421285

.
sly-u.5
for
101251159

.
sly-u.5
for
101247512

.
osa-u.5
for
4334804

.
zma-u.5
for
103625714

.
zma-u.5
for
100273721

.


Ortholog ID: 6679
Species ath gma gma sly sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol AT5G50970 LOC100799587 LOC102662882 LOC101247512 LOC101251159 LOC4334804 LOC100273721 LOC103625714 LOC103857256 LOC100255948 LOC7484887 LOC11421285 LOC123114363 LOC123123863 LOC123395154 LOC107943936 LOC107949630 LOC106387530 LOC106387908 LOC8061403 LOC102579586 LOC102592668 LOC102625933 LOC100832301 LOC107820683 LOC107784361
Function* transducin family protein / WD-40 repeat family protein U5 small nuclear ribonucleoprotein 40 kDa protein U5 small nuclear ribonucleoprotein 40 kDa protein uncharacterized LOC101247512 uncharacterized LOC101251159 uncharacterized LOC4334804 uncharacterized LOC100273721 U5 small nuclear ribonucleoprotein 40 kDa protein uncharacterized LOC103857256 uncharacterized LOC100255948 uncharacterized LOC7484887 uncharacterized LOC11421285 U5 small nuclear ribonucleoprotein 40 kDa protein U5 small nuclear ribonucleoprotein 40 kDa protein U5 small nuclear ribonucleoprotein 40 kDa protein protein tipD uncharacterized LOC107949630 uncharacterized LOC106387530 protein tipD U5 small nuclear ribonucleoprotein 40 kDa protein uncharacterized LOC102579586 uncharacterized LOC102592668 uncharacterized LOC102625933 uncharacterized LOC100832301 uncharacterized LOC107820683 uncharacterized LOC107784361
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 3
gma00730 Thiamine metabolism 2
gma01240 Biosynthesis of cofactors 2
gma04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma04075 Plant hormone signal transduction 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00020 Citrate cycle (TCA cycle) 2
ppo01200 Carbon metabolism 2
ppo01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00071 Fatty acid degradation 2
ghi00592 alpha-Linolenic acid metabolism 2
ghi01212 Fatty acid metabolism 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna04382 Cornified envelope formation 6
bna00562 Inositol phosphate metabolism 3
bna04070 Phosphatidylinositol signaling system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04382 Cornified envelope formation 4
bna00562 Inositol phosphate metabolism 3
bna04070 Phosphatidylinositol signaling system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03430 Mismatch repair 4
sot03410 Base excision repair 3
sot03030 DNA replication 2
sot03420 Nucleotide excision repair 2
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03250 Viral life cycle - HIV-1 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835170 100799587 102662882 101247512 101251159 4334804 100273721 103625714 103857256 100255948 7484887 11421285 123114363 123123863 123395154 107943936 107949630 106387530 106387908 8061403 102579586 102592668 102625933 100832301 107820683 107784361
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