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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LTI78   low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) 
 ath-r.7   LTI78   low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) 
 ath-m.9   LTI78   low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) 
 ath-e.2   LTI78   low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) 
 ath-m.4.bio   LTI78   low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) 
 ath-m.4.hor   LTI78   low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) 
 ath-m.4.lig   LTI78   low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) 
 ath-m.4.str   LTI78   low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) 
 ath-m.4.tis   LTI78   low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) 
 ath-u.5   AT4G25580   CAP160 protein 
 ath-u.5   LTI65   CAP160 protein 
 bra-r.6   103852107   low-temperature-induced 65 kDa protein 
 bra-r.6   103861574   low-temperature-induced 65 kDa protein 
 bna-r.1   125581688   low-temperature-induced 65 kDa protein-like 
 ghi-r.1   107943476   low-temperature-induced 65 kDa protein 
 ghi-r.1   107936859   low-temperature-induced 65 kDa protein 
 cit-r.1   102609060   low-temperature-induced 65 kDa protein 
 gma-u.5   PM39   seed maturation protein PM39 
 gma-u.5   106796485   low-temperature-induced 65 kDa protein 
 vvi-u.5   100260796   low-temperature-induced 65 kDa protein 
 ppo-u.5   7484381   low-temperature-induced 65 kDa protein 
 mtr-u.5   25485071   low-temperature-induced 65 kDa protein 
 mtr-u.5   25485072   low-temperature-induced 65 kDa protein 
 sly-u.5   101266908   low-temperature-induced 65 kDa protein-like 
 sot-r.1   102596667   low-temperature-induced 65 kDa protein-like 
 nta-r.1   107819933   uncharacterized LOC107819933 
 nta-r.1   107814505   low-temperature-induced 65 kDa protein-like 
 nta-r.1   107782725   low-temperature-induced 65 kDa protein 

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Top 50 coexpressed genes to LTI78 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LTI78 (ath-u.5 coexpression data)

CoexMap"835307"


athLTI78 | Entrez gene ID : 835307      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta bdi osa tae zma cre sbi hvu
Paralog 11 2 1 2 1 2 1 1 2 1 1 3 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009609 [list] [network] response to symbiotic bacterium  (2 genes)  IEP  
GO:0009269 [list] [network] response to desiccation  (24 genes)  IMP  
GO:0010555 [list] [network] response to mannitol  (27 genes)  IEP  
GO:1902074 [list] [network] response to salt  (50 genes)  IEP  
GO:0042538 [list] [network] hyperosmotic salinity response  (57 genes)  IEP  
GO:2000280 [list] [network] regulation of root development  (79 genes)  IDA  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP  
GO:0010150 [list] [network] leaf senescence  (128 genes)  IMP  
GO:0000302 [list] [network] response to reactive oxygen species  (142 genes)  IEP  
GO:0009611 [list] [network] response to wounding  (271 genes)  IEP  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IEP IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO:0006970 [list] [network] response to osmotic stress  (578 genes)  IGI  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0016788 [list] [network] hydrolase activity, acting on ester bonds  (594 genes)  IDA  
Protein NP_200044.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  vacu 1  (predict for NP_200044.1)
Subcellular
localization
TargetP
other 9  (predict for NP_200044.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LTI78
ath-r.7
for
LTI78
ath-m.9
for
LTI78
ath-e.2
for
LTI78
ath-m.4.bio
for
LTI78
ath-m.4.hor
for
LTI78
ath-m.4.lig
for
LTI78
ath-m.4.str
for
LTI78
ath-m.4.tis
for
LTI78
ath-u.5
for
AT4G25580
ath-u.5
for
LTI65
bra-r.6
for
103852107
bra-r.6
for
103861574
bna-r.1
for
125581688
ghi-r.1
for
107943476
ghi-r.1
for
107936859
cit-r.1
for
102609060
gma-u.5
for
PM39
gma-u.5
for
106796485
vvi-u.5
for
100260796
ppo-u.5
for
7484381
mtr-u.5
for
25485071
mtr-u.5
for
25485072
sly-u.5
for
101266908
sot-r.1
for
102596667
nta-r.1
for
107819933
nta-r.1
for
107814505
nta-r.1
for
107782725


Ortholog ID: 4419
Species ath ath ath bra bra bra bna ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta nta
Symbol LTI78 AT4G25580 LTI65 LOC103852107 LOC103861574 LOC103857129 LOC106412087 LOC107943476 LOC107936859 LOC102609060 LOC100801440 LOC100790856 LOC100260796 LOC7484381 LOC25485071 LOC25485072 LOC101266908 LOC102596667 LOC107814505 LOC107782725 LOC107784000
Function* low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) CAP160 protein CAP160 protein low-temperature-induced 65 kDa protein low-temperature-induced 65 kDa protein low-temperature-induced 65 kDa protein-like low-temperature-induced 65 kDa protein low-temperature-induced 65 kDa protein low-temperature-induced 65 kDa protein low-temperature-induced 65 kDa protein low-temperature-induced 65 kDa protein receptor-like protein EIX1 low-temperature-induced 65 kDa protein low-temperature-induced 65 kDa protein low-temperature-induced 65 kDa protein low-temperature-induced 65 kDa protein low-temperature-induced 65 kDa protein-like low-temperature-induced 65 kDa protein-like low-temperature-induced 65 kDa protein-like low-temperature-induced 65 kDa protein uncharacterized LOC107784000
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00051 Fructose and mannose metabolism 2
bna00500 Starch and sucrose metabolism 2
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 6
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
mtr04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 5
sot04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 7
nta04016 MAPK signaling pathway - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835307 828663 835306 103852107 103861574 103857129 106412087 107943476 107936859 102609060 100801440 100790856 100260796 7484381 25485071 25485072 101266908 102596667 107814505 107782725 107784000
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