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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G52820   WD-40 repeat family protein / notchless protein 
 ath-r.7   AT5G52820   WD-40 repeat family protein / notchless protein 
 ath-m.9   AT5G52820   WD-40 repeat family protein / notchless protein 
 ath-e.2   AT5G52820   WD-40 repeat family protein / notchless protein 
 ath-m.4.bio   AT5G52820   WD-40 repeat family protein / notchless protein 
 ath-m.4.hor   AT5G52820   WD-40 repeat family protein / notchless protein 
 ath-m.4.lig   AT5G52820   WD-40 repeat family protein / notchless protein 
 ath-m.4.str   AT5G52820   WD-40 repeat family protein / notchless protein 
 ath-m.4.tis   AT5G52820   WD-40 repeat family protein / notchless protein 
 gma-u.5   100799283   notchless protein homolog 
 gma-u.5   100796328   notchless protein homolog 
 vvi-u.5   100262007   notchless protein homolog 
 ppo-u.5   7482296   notchless protein homolog 
 mtr-u.5   25483544   notchless protein homolog 
 sly-u.5   101261215   notchless protein homolog 
 osa-u.5   4347950   notchless protein homolog 
 osa-u.5   4350837   notchless protein homolog 
 zma-u.5   100282591   uncharacterized LOC100282591 

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Top 50 coexpressed genes to AT5G52820 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G52820 (ath-u.5 coexpression data)

CoexMap"835359"


athAT5G52820 | Entrez gene ID : 835359      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0043022 [list] [network] ribosome binding  (15 genes)  IPI  
Protein NP_200094.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1,  cyto 1,  cysk 1  (predict for NP_200094.1)
Subcellular
localization
TargetP
other 9  (predict for NP_200094.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G52820

.
ath-r.7
for
AT5G52820

.
ath-m.9
for
AT5G52820

.
ath-e.2
for
AT5G52820

.
ath-m.4.bio
for
AT5G52820

.
ath-m.4.hor
for
AT5G52820

.
ath-m.4.lig
for
AT5G52820

.
ath-m.4.str
for
AT5G52820

.
ath-m.4.tis
for
AT5G52820

.
gma-u.5
for
100799283

.
gma-u.5
for
100796328

.
vvi-u.5
for
100262007

.
ppo-u.5
for
7482296

.
mtr-u.5
for
25483544

.
sly-u.5
for
101261215

.
osa-u.5
for
4347950

.
osa-u.5
for
4350837

.
zma-u.5
for
100282591

.


Ortholog ID: 8197
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G52820 LOC100799283 LOC100796328 LOC101261215 LOC4347950 LOC4350837 LOC100282591 LOC103852075 LOC100262007 LOC7482296 LOC25483544 LOC123183425 LOC123071068 LOC107933970 LOC107900765 LOC106391592 LOC106385205 CHLRE_01g000600v5 LOC8065340 LOC102602023 LOC102619181 LOC100838384 LOC107826211 LOC107829966
Function* WD-40 repeat family protein / notchless protein notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog uncharacterized LOC100282591 notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog uncharacterized protein notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog notchless protein homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa03008 Ribosome biogenesis in eukaryotes 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03013 Nucleocytoplasmic transport 3
tae03018 RNA degradation 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 7
ghi00261 Monobactam biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 7
ghi00261 Monobactam biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 5
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835359 100799283 100796328 101261215 4347950 4350837 100282591 103852075 100262007 7482296 25483544 123183425 123071068 107933970 107900765 106391592 106385205 5725882 8065340 102602023 102619181 100838384 107826211 107829966
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