ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	BBX29	B-box type zinc finger family protein
ath-r.7	BBX29	B-box type zinc finger family protein
ath-m.9	BBX29	B-box type zinc finger family protein
ath-e.2	BBX29	B-box type zinc finger family protein
ath-m.4.bio	BBX29	B-box type zinc finger family protein
ath-m.4.hor	BBX29	B-box type zinc finger family protein
ath-m.4.lig	BBX29	B-box type zinc finger family protein
ath-m.4.str	BBX29	B-box type zinc finger family protein
ath-m.4.tis	BBX29	B-box type zinc finger family protein
ath-u.5	BBX31	B-box type zinc finger family protein
ath-u.5	BBX28	B-box type zinc finger family protein
ath-u.5	BBX30	B-box type zinc finger family protein
gma-u.5	100805832	B-box domain protein 31
gma-u.5	100801024	zinc finger protein CONSTANS-LIKE 1
gma-u.5	100789532	B-box zinc finger protein 32
vvi-u.5	100264749	zinc finger protein CONSTANS
vvi-u.5	100252747	putative zinc finger protein At1g68190
vvi-u.5	100246896	zinc finger protein CONSTANS-LIKE 4
ppo-u.5	7460864	B-box zinc finger protein 24
ppo-u.5	18095672	zinc finger protein CONSTANS-LIKE 4
mtr-u.5	11417549	zinc finger protein CONSTANS-LIKE 4
sly-u.5	101246984	zinc finger protein CONSTANS-LIKE 2
sly-u.5	101247540	B-box domain protein 30
sly-u.5	101265452	zinc finger protein CONSTANS-LIKE 4
osa-u.5	107278220	B-box zinc finger protein 32
osa-u.5	4328476	B-box zinc finger protein 32
osa-u.5	4344813	uncharacterized LOC4344813
zma-u.5	100281114	B-box zinc finger family protein
zma-u.5	109946110	B-box zinc finger protein 32-like
zma-u.5	109943107	zinc finger protein CONSTANS

Annotation

functional annotation

KEGG

GO BP

GO:0071456 [list] [network] cellular response to hypoxia	(241 genes)	HEP
GO:0009555 [list] [network] pollen development	(385 genes)	IMP
GO:0009409 [list] [network] response to cold	(436 genes)	IEP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	TAS

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA ISM

GO MF

GO:0008270 [list] [network] zinc ion binding	(391 genes)	IEA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_200258.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, nucl 5

(predict for NP_200258.2)

Subcellular
localization
TargetP

other 8

(predict for NP_200258.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for BBX29	ath-r.7 for BBX29	ath-m.9 for BBX29	ath-e.2 for BBX29	ath-m.4.bio for BBX29	ath-m.4.hor for BBX29	ath-m.4.lig for BBX29	ath-m.4.str for BBX29	ath-m.4.tis for BBX29	ath-u.5 for BBX31	ath-u.5 for BBX28	ath-u.5 for BBX30	gma-u.5 for 100805832	gma-u.5 for 100801024	gma-u.5 for 100789532	vvi-u.5 for 100264749	vvi-u.5 for 100252747	vvi-u.5 for 100246896	ppo-u.5 for 7460864	ppo-u.5 for 18095672	mtr-u.5 for 11417549	sly-u.5 for 101246984	sly-u.5 for 101247540	sly-u.5 for 101265452	osa-u.5 for 107278220	osa-u.5 for 4328476	osa-u.5 for 4344813	zma-u.5 for 100281114	zma-u.5 for 109946110	zma-u.5 for 109943107

Ortholog

Ortholog ID: 710

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

hvu

sbi

bdi

cre

Symbol

BBX30

BBX28

Function^*

B-box type zinc finger family protein

B-box domain protein 30

putative zinc finger protein CONSTANS-LIKE 11

zinc finger protein CONSTANS-LIKE 1-like

zinc finger protein CONSTANS-LIKE 1

uncharacterized LOC102620746

protein SOB FIVE-LIKE 2

zinc finger protein CONSTANS-LIKE 1

B-box zinc finger protein 32

B-box domain protein 30

zinc finger protein CONSTANS

B-box zinc finger protein 24

zinc finger protein CONSTANS-LIKE 4

zinc finger protein CONSTANS-LIKE 2

zinc finger protein HD1-like

zinc finger protein CONSTANS-LIKE 3-like

SAGA-associated factor 73-like

B-box domain protein 30-like

uncharacterized LOC107762308

B-box zinc finger protein 32

B-box zinc finger family protein

zinc finger protein CONSTANS

B-box zinc finger protein 32-like

ATPase family AAA domain-containing protein 2

B-box zinc finger protein 32

zinc finger protein CONSTANS-LIKE 4

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	4
bra04075	Plant hormone signal transduction	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00280	Valine, leucine and isoleucine degradation	3
bna00650	Butanoate metabolism	3
bna04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2
vvi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	7
ppo04016	MAPK signaling pathway - plant	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	3
sly00520	Amino sugar and nucleotide sugar metabolism	2
sly01250	Biosynthesis of nucleotide sugars	2
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	3
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	4
sbi00270	Cysteine and methionine metabolism	2
sbi00543	Exopolysaccharide biosynthesis	2
sbi00920	Sulfur metabolism	2
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00561	Glycerolipid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

3769879

828839

103871011

103844901

106412037

107903524

102620746

102612309

100801024

100789532

104880899

100264749

7460864

18095672

11417549

101246984

104649503

102600093

102603949

107779164

107762308

4328476

107278220

100281114

109943107

123398146

123402306

8080907

8061571

100827682

100830331

66053705

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to BBX29 (ath-u.5 coexpression data)

Top 50 enrichment test to BBX29 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	12	3	3	2	1	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to BBX29 (ath-u.5 coexpression data)

Top 50 enrichment test to BBX29 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**