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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G54520   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   AT5G54520   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   AT5G54520   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   AT5G54520   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   AT5G54520   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   AT5G54520   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   AT5G54520   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   AT5G54520   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   AT5G54520   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100800836   WD repeat-containing protein 25 
 gma-u.5   100816290   WD repeat-containing protein 25 
 gma-u.5   100790592   WD repeat-containing protein 25 
 vvi-u.5   100250407   uncharacterized LOC100250407 
 ppo-u.5   18095865   uncharacterized LOC18095865 
 mtr-u.5   25502675   WD repeat-containing protein 25 
 sly-u.5   101260632   uncharacterized LOC101260632 
 osa-u.5   4329163   uncharacterized LOC4329163 
 zma-u.5   100281243   uncharacterized LOC100281243 
 zma-u.5   103651697   WD repeat-containing protein 25 

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Top 50 coexpressed genes to AT5G54520 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G54520 (ath-u.5 coexpression data)

CoexMap"835540"


athAT5G54520 | Entrez gene ID : 835540      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 3 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
Protein NP_200263.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1,  cyto 1,  cysk 1  (predict for NP_200263.2)
Subcellular
localization
TargetP
other 9  (predict for NP_200263.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G54520

.
ath-r.7
for
AT5G54520

.
ath-m.9
for
AT5G54520

.
ath-e.2
for
AT5G54520

.
ath-m.4.bio
for
AT5G54520

.
ath-m.4.hor
for
AT5G54520

.
ath-m.4.lig
for
AT5G54520

.
ath-m.4.str
for
AT5G54520

.
ath-m.4.tis
for
AT5G54520

.
gma-u.5
for
100800836

.
gma-u.5
for
100816290

.
gma-u.5
for
100790592

.
vvi-u.5
for
100250407

.
ppo-u.5
for
18095865

.
mtr-u.5
for
25502675

.
sly-u.5
for
101260632

.
osa-u.5
for
4329163

.
zma-u.5
for
100281243

.
zma-u.5
for
103651697

.


Ortholog ID: 10396
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae hvu ghi bna bna sbi sot cit bdi nta nta
Symbol AT5G54520 LOC100790592 LOC100800836 LOC101260632 LOC4329163 LOC103651697 LOC100281243 LOC103857038 LOC100250407 LOC18095865 LOC25502675 LOC123051227 LOC123424541 LOC107951778 LOC106346021 LOC106443326 LOC8066988 LOC102598098 LOC102619979 LOC100828745 LOC107770230 LOC107823534
Function* Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein 25 WD repeat-containing protein 25 uncharacterized LOC101260632 uncharacterized LOC4329163 WD repeat-containing protein 25 uncharacterized LOC100281243 WD repeat-containing protein 25 uncharacterized LOC100250407 uncharacterized LOC18095865 WD repeat-containing protein 25 WD repeat-containing protein 25 WD repeat-containing protein 25 WD repeat-containing protein 25 WD repeat-containing protein 25 WD repeat-containing protein 25-like WD repeat-containing protein 25 WD repeat-containing protein 25 uncharacterized LOC102619979 WD repeat-containing protein 25 uncharacterized LOC107770230 uncharacterized LOC107823534
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 3
osa04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 3
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835540 100790592 100800836 101260632 4329163 103651697 100281243 103857038 100250407 18095865 25502675 123051227 123424541 107951778 106346021 106443326 8066988 102598098 102619979 100828745 107770230 107823534
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