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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ATCRT1   RING/U-box superfamily protein 
 ath-r.7   ATCRT1   RING/U-box superfamily protein 
 ath-m.9   ATCRT1   RING/U-box superfamily protein 
 ath-e.2   ATCRT1   RING/U-box superfamily protein 
 ath-m.4.bio   ATCRT1   RING/U-box superfamily protein 
 ath-m.4.hor   ATCRT1   RING/U-box superfamily protein 
 ath-m.4.lig   ATCRT1   RING/U-box superfamily protein 
 ath-m.4.str   ATCRT1   RING/U-box superfamily protein 
 ath-m.4.tis   ATCRT1   RING/U-box superfamily protein 
 ath-u.5   AT3G13430   RING/U-box superfamily protein 
 ath-u.5   AT4G26400   RING/U-box superfamily protein 
 ath-u.5   AT1G55530   RING/U-box superfamily protein 
 gma-u.5   100784876   E3 ubiquitin-protein ligase RING1 
 vvi-u.5   100250148   E3 ubiquitin-protein ligase SIRP1 
 ppo-u.5   7489682   E3 ubiquitin-protein ligase SIRP1 
 ppo-u.5   7483225   E3 ubiquitin-protein ligase SIRP1 
 ppo-u.5   7469869   E3 ubiquitin-protein ligase SIRP1 
 mtr-u.5   11433228   E3 ubiquitin-protein ligase SIRP1 
 sly-u.5   101268503   E3 ubiquitin-protein ligase SIRP1 
 osa-u.5   4339152   E3 ubiquitin-protein ligase SIRP1-like 
 osa-u.5   4334547   E3 ubiquitin-protein ligase SIRP1-like 
 zma-u.5   100191157   RING/U-box superfamily protein 
 zma-u.5   100272564   putative RING zinc finger domain superfamily protein 
 zma-u.5   100282229   uncharacterized LOC100282229 

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Top 50 coexpressed genes to ATCRT1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ATCRT1 (ath-u.5 coexpression data)

CoexMap"835734"


athATCRT1 | Entrez gene ID : 835734      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 12 1 1 3 1 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_200445.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_200445.1)
Subcellular
localization
TargetP
other 7  (predict for NP_200445.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ATCRT1
ath-r.7
for
ATCRT1
ath-m.9
for
ATCRT1
ath-e.2
for
ATCRT1
ath-m.4.bio
for
ATCRT1
ath-m.4.hor
for
ATCRT1
ath-m.4.lig
for
ATCRT1
ath-m.4.str
for
ATCRT1
ath-m.4.tis
for
ATCRT1
ath-u.5
for
AT3G13430
ath-u.5
for
AT4G26400
ath-u.5
for
AT1G55530
gma-u.5
for
100784876
vvi-u.5
for
100250148
ppo-u.5
for
7489682
ppo-u.5
for
7483225
ppo-u.5
for
7469869
mtr-u.5
for
11433228
sly-u.5
for
101268503
osa-u.5
for
4339152
osa-u.5
for
4334547
zma-u.5
for
100191157
zma-u.5
for
100272564
zma-u.5
for
100282229


Ortholog ID: 2029
Species ath ath bra bra bna bna ghi cit gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol AT1G55530 AT3G13430 LOC103832581 LOC103856934 LOC125577226 LOC106437662 LOC107927087 LOC102627992 LOC100784876 LOC100250148 LOC7469869 LOC7483225 LOC11433228 LOC101268503 LOC102578980 LOC107811088 LOC107761015 LOC4339152 LOC4334547 LOC100282229 LOC100272564 LOC123105603 LOC123182406 LOC123452949 LOC123444355 LOC110430822 LOC8064158 LOC100831529 LOC100832937
Function* RING/U-box superfamily protein RING/U-box superfamily protein E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1-like E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase RING1 E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase RING1 E3 ubiquitin-protein ligase SIRP1-like E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1-like E3 ubiquitin-protein ligase SIRP1-like uncharacterized LOC100282229 putative RING zinc finger domain superfamily protein E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1-like E3 ubiquitin-protein ligase SIRP1-like E3 ubiquitin-protein ligase RZF1-like E3 ubiquitin-protein ligase RING1-like E3 ubiquitin-protein ligase SIRP1 E3 ubiquitin-protein ligase SIRP1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 6
ath03040 Spliceosome 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 10
bra04626 Plant-pathogen interaction 5
bra03040 Spliceosome 3
bra04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
cit04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03083 Polycomb repressive complex 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04144 Endocytosis 2
mtr04145 Phagosome 2
mtr04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00020 Citrate cycle (TCA cycle) 2
sbi00480 Glutathione metabolism 2
sbi01200 Carbon metabolism 2
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04146 Peroxisome 4
bdi04142 Lysosome 3
bdi00330 Arginine and proline metabolism 3
bdi01200 Carbon metabolism 3
bdi00071 Fatty acid degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00071 Fatty acid degradation 2
bdi00592 alpha-Linolenic acid metabolism 2
bdi01212 Fatty acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842000 820543 103832581 103856934 125577226 106437662 107927087 102627992 100784876 100250148 7469869 7483225 11433228 101268503 102578980 107811088 107761015 4339152 4334547 100282229 100272564 123105603 123182406 123452949 123444355 110430822 8064158 100831529 100832937
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