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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SRR1   sensitivity to red light reduced protein (SRR1) 
 ath-r.7   SRR1   sensitivity to red light reduced protein (SRR1) 
 ath-m.9   SRR1   sensitivity to red light reduced protein (SRR1) 
 ath-e.2   SRR1   sensitivity to red light reduced protein (SRR1) 
 ath-m.4.bio   SRR1   sensitivity to red light reduced protein (SRR1) 
 ath-m.4.hor   SRR1   sensitivity to red light reduced protein (SRR1) 
 ath-m.4.lig   SRR1   sensitivity to red light reduced protein (SRR1) 
 ath-m.4.str   SRR1   sensitivity to red light reduced protein (SRR1) 
 ath-m.4.tis   SRR1   sensitivity to red light reduced protein (SRR1) 
 bra-r.6   103851571   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 bra-r.6   103845377   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 bna-r.1   106420552   protein SENSITIVITY TO RED LIGHT REDUCED 1-like 
 bna-r.1   125581360   protein SENSITIVITY TO RED LIGHT REDUCED 1-like 
 bna-r.1   106447205   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 ghi-r.1   121207584   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 cit-r.1   102614293   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 gma-u.5   100812408   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 gma-u.5   100798856   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 vvi-u.5   100251366   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 ppo-u.5   7462785   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 ppo-u.5   7476849   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 mtr-u.5   11419761   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 sly-u.5   112941659   uncharacterized LOC112941659 
 sot-r.1   102603864   protein SENSITIVITY TO RED LIGHT REDUCED 1-like 
 sot-r.1   102601949   protein SENSITIVITY TO RED LIGHT REDUCED 1-like 
 nta-r.1   107767249   protein SENSITIVITY TO RED LIGHT REDUCED 1-like 
 osa-u.5   4337632   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 zma-u.5   100285750   SRR1-like protein 
 tae-r.2   123128814   uncharacterized LOC123128814 
 tae-r.2   123180134   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 hvu-r.1   123398381   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 sbi-r.1   8078730   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 bdi-r.1   100844974   protein SENSITIVITY TO RED LIGHT REDUCED 1 
 cre-r.1   CHLRE_10g423700v5   uncharacterized protein 

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Top 50 coexpressed genes to SRR1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SRR1 (ath-u.5 coexpression data)

CoexMap"836075"


athSRR1 | Entrez gene ID : 836075      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 1 1 2 1 2 1 1 2 1 1 1 2 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  IMP  
GO:0010017 [list] [network] red or far-red light signaling pathway  (53 genes)  IMP  
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
Protein NP_200764.1 [sequence] [blastp]
NP_851224.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto_nucl 5,  cyto 1  (predict for NP_200764.1)
nucl 8,  cyto_nucl 5,  cyto 1  (predict for NP_851224.1)
Subcellular
localization
TargetP
other 8  (predict for NP_200764.1)
other 8  (predict for NP_851224.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SRR1
ath-r.7
for
SRR1
ath-m.9
for
SRR1
ath-e.2
for
SRR1
ath-m.4.bio
for
SRR1
ath-m.4.hor
for
SRR1
ath-m.4.lig
for
SRR1
ath-m.4.str
for
SRR1
ath-m.4.tis
for
SRR1
bra-r.6
for
103851571
bra-r.6
for
103845377
bna-r.1
for
106420552
bna-r.1
for
125581360
bna-r.1
for
106447205
ghi-r.1
for
121207584
cit-r.1
for
102614293
gma-u.5
for
100812408
gma-u.5
for
100798856
vvi-u.5
for
100251366
ppo-u.5
for
7462785
ppo-u.5
for
7476849
mtr-u.5
for
11419761
sly-u.5
for
112941659
sot-r.1
for
102603864
sot-r.1
for
102601949
nta-r.1
for
107767249
osa-u.5
for
4337632
zma-u.5
for
100285750
tae-r.2
for
123128814
tae-r.2
for
123180134
hvu-r.1
for
123398381
sbi-r.1
for
8078730
bdi-r.1
for
100844974
cre-r.1
for
CHLRE_10g423700v5


Ortholog ID: 5186
Species ath bra bra bna bna bna ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta osa zma tae tae hvu sbi bdi cre
Symbol SRR1 LOC103851571 LOC103845377 LOC106420552 LOC125581360 LOC106447205 LOC121207584 LOC102614293 LOC100812408 LOC100798856 LOC100251366 LOC7462785 LOC7476849 LOC11419761 LOC112941659 LOC104644442 LOC102603864 LOC102596174 LOC107767249 LOC4337632 LOC100285750 LOC123180134 LOC123106849 LOC123398381 LOC8078730 LOC100844974 CHLRE_10g423700v5
Function* sensitivity to red light reduced protein (SRR1) protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like protein SENSITIVITY TO RED LIGHT REDUCED 1-like protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 uncharacterized LOC112941659 uncharacterized LOC104644442 protein SENSITIVITY TO RED LIGHT REDUCED 1-like protein SENSITIVITY TO RED LIGHT REDUCED 1-like protein SENSITIVITY TO RED LIGHT REDUCED 1-like protein SENSITIVITY TO RED LIGHT REDUCED 1 SRR1-like protein protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 protein SENSITIVITY TO RED LIGHT REDUCED 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
bra00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 4
gma03040 Spliceosome 3
gma03018 RNA degradation 3
gma04144 Endocytosis 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
sot03018 RNA degradation 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 2
cre00270 Cysteine and methionine metabolism 2
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836075 103851571 103845377 106420552 125581360 106447205 121207584 102614293 100812408 100798856 100251366 7462785 7476849 11419761 112941659 104644442 102603864 102596174 107767249 4337632 100285750 123180134 123106849 123398381 8078730 100844974 66054961
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