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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   GCD1   ribosomal protein L20 
 ath-r.7   GCD1   ribosomal protein L20 
 ath-e.2   GCD1   ribosomal protein L20 
 bra-r.6   103855108   uncharacterized LOC103855108 
 bra-r.6   103874663   uncharacterized LOC103874663 
 bna-r.1   106347794   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 bna-r.1   106422004   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 bna-r.1   106383889   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 ghi-r.1   107936040   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 ghi-r.1   107934490   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 cit-r.1   102609865   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 gma-u.5   100804430   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 gma-u.5   100797913   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 vvi-u.5   100247465   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 ppo-u.5   7491725   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 mtr-u.5   112419509   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 sly-u.5   101266515   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 sot-r.1   102600786   uncharacterized LOC102600786 
 nta-r.1   107776044   protein GAMETE CELL DEFECTIVE 1, mitochondrial-like 
 nta-r.1   107806744   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 osa-u.5   4327965   protein GAMETE CELL DEFECTIVE 1, mitochondrial-like 
 zma-u.5   100193812   uncharacterized LOC100193812 
 tae-r.2   123079456   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 tae-r.2   123071088   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 tae-r.2   123062323   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 hvu-r.1   123444624   protein GAMETE CELL DEFECTIVE 1, mitochondrial 
 sbi-r.1   8082401   uncharacterized LOC8082401 
 bdi-r.1   100839681   uncharacterized LOC100839681 

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Top 50 coexpressed genes to GCD1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GCD1 (ath-u.5 coexpression data)

CoexMap"836348"


athGCD1 | Entrez gene ID : 836348      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0007006 [list] [network] mitochondrial membrane organization  (15 genes)  IMP  
GO:0048868 [list] [network] pollen tube development  (225 genes)  IMP  
GO:0048229 [list] [network] gametophyte development  (505 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO:0007154 [list] [network] cell communication  (1176 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_001190596.1 [sequence] [blastp]
NP_201033.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 4,  mito 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_001190596.1)
chlo 5,  nucl 3,  mito 2  (predict for NP_201033.2)
Subcellular
localization
TargetP
mito 5  (predict for NP_001190596.1)
mito 5  (predict for NP_201033.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
GCD1
ath-r.7
for
GCD1
ath-e.2
for
GCD1
bra-r.6
for
103855108
bra-r.6
for
103874663
bna-r.1
for
106347794
bna-r.1
for
106422004
bna-r.1
for
106383889
ghi-r.1
for
107936040
ghi-r.1
for
107934490
cit-r.1
for
102609865
gma-u.5
for
100804430
gma-u.5
for
100797913
vvi-u.5
for
100247465
ppo-u.5
for
7491725
mtr-u.5
for
112419509
sly-u.5
for
101266515
sot-r.1
for
102600786
nta-r.1
for
107776044
nta-r.1
for
107806744
osa-u.5
for
4327965
zma-u.5
for
100193812
tae-r.2
for
123079456
tae-r.2
for
123071088
tae-r.2
for
123062323
hvu-r.1
for
123444624
sbi-r.1
for
8082401
bdi-r.1
for
100839681


Ortholog ID: 9187
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol GCD1 LOC103855108 LOC103874663 LOC106347794 LOC106383889 BNAC03G51790D LOC107936040 LOC107934490 LOC102609865 LOC100804430 LOC100797913 LOC100247465 LOC7491725 LOC112419509 LOC101266515 LOC102600786 LOC107776044 LOC107806744 LOC4327965 LOC100193812 LOC123079456 LOC123071088 LOC123062323 LOC123444624 LOC8082401 LOC100839681
Function* ribosomal protein L20 uncharacterized LOC103855108 uncharacterized LOC103874663 protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial uncharacterized LOC102600786 protein GAMETE CELL DEFECTIVE 1, mitochondrial-like protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial-like uncharacterized LOC100193812 protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial protein GAMETE CELL DEFECTIVE 1, mitochondrial uncharacterized LOC8082401 uncharacterized LOC100839681
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00480 Glutathione metabolism 2
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 3
bra00230 Purine metabolism 2
bra04626 Plant-pathogen interaction 2
bra00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi04626 Plant-pathogen interaction 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03018 RNA degradation 4
ghi04626 Plant-pathogen interaction 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 3
ppo03013 Nucleocytoplasmic transport 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00020 Citrate cycle (TCA cycle) 4
sly01200 Carbon metabolism 4
sly00785 Lipoic acid metabolism 3
sly01210 2-Oxocarboxylic acid metabolism 3
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03013 Nucleocytoplasmic transport 3
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 10
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836348 103855108 103874663 106347794 106383889 106347207 107936040 107934490 102609865 100804430 100797913 100247465 7491725 112419509 101266515 102600786 107776044 107806744 4327965 100193812 123079456 123071088 123062323 123444624 8082401 100839681
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