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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RABA4a   RAB GTPase homolog A4A 
 ath-r.7   RABA4a   RAB GTPase homolog A4A 
 ath-m.9   RABA4a   RAB GTPase homolog A4A 
 ath-e.2   RABA4a   RAB GTPase homolog A4A 
 ath-m.4.bio   RABA4a   RAB GTPase homolog A4A 
 ath-m.4.hor   RABA4a   RAB GTPase homolog A4A 
 ath-m.4.lig   RABA4a   RAB GTPase homolog A4A 
 ath-m.4.str   RABA4a   RAB GTPase homolog A4A 
 ath-m.4.tis   RABA4a   RAB GTPase homolog A4A 
 ath-u.5   RABA4B   RAB GTPase homolog A4B 
 ath-u.5   RABA4C   RAB GTPase homolog A4C 
 gma-u.5   547878   ras-related protein Rab11A 
 gma-u.5   100820137   ras-related protein RABA4d 
 gma-u.5   100808058   ras-related protein RABA4d-like 
 vvi-u.5   100246065   ras-related protein RGP1 
 vvi-u.5   100262838   ras-related protein Rab11A-like 
 ppo-u.5   7480096   ras-related protein RABA4d 
 mtr-u.5   11417615   ras-related protein Rab11A 
 mtr-u.5   25501877   ras-related protein Rab11A 
 sly-u.5   101264460   ras-related protein RGP1 
 sly-u.5   101247904   ras-related protein Rab11D 
 osa-u.5   4348493   ras-related protein Rab11D 
 osa-u.5   4346614   ras-related protein RGP1-like 
 zma-u.5   100285194   ras-related protein Rab11D 
 zma-u.5   100272235   Ras-related protein RABA4a 
 zma-u.5   100280470   uncharacterized LOC100280470 

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Top 50 coexpressed genes to RABA4a (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RABA4a (ath-u.5 coexpression data)

CoexMap"836652"


athRABA4a | Entrez gene ID : 836652    
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 11 3 2 1 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042546 [list] [network] cell wall biogenesis  (199 genes)  IMP  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_201330.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cysk 3,  cyto_nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_201330.1)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for NP_201330.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RABA4a

.
ath-r.7
for
RABA4a

.
ath-m.9
for
RABA4a

.
ath-e.2
for
RABA4a

.
ath-m.4.bio
for
RABA4a

.
ath-m.4.hor
for
RABA4a

.
ath-m.4.lig
for
RABA4a

.
ath-m.4.str
for
RABA4a

.
ath-m.4.tis
for
RABA4a

.
ath-u.5
for
RABA4B

.
ath-u.5
for
RABA4C

.
gma-u.5
for
547878

.
gma-u.5
for
100820137

.
gma-u.5
for
100808058

.
vvi-u.5
for
100246065

.
vvi-u.5
for
100262838

.
ppo-u.5
for
7480096

.
mtr-u.5
for
11417615

.
mtr-u.5
for
25501877

.
sly-u.5
for
101264460

.
sly-u.5
for
101247904

.
osa-u.5
for
4348493

.
osa-u.5
for
4346614

.
zma-u.5
for
100285194

.
zma-u.5
for
100272235

.
zma-u.5
for
100280470

.


Ortholog ID: 955
Species ath ath gma gma sly osa osa zma zma bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna sbi sbi sot cit cit bdi bdi nta
Symbol RABA4C RABA4a LOC100791062 LOC547878 LOC101264460 LOC4348493 LOC4346614 LOC100285194 LOC100283230 LOC103854349 LOC100246065 LOC100262838 LOC7480096 LOC7466795 LOC11417615 LOC123117867 LOC123120992 LOC123452574 LOC123428862 LOC107930116 LOC107900727 LOC106441256 LOC8155288 LOC8063474 LOC102591246 LOC102607112 LOC102627675 LOC100828714 LOC100828334 LOC107807251
Function* RAB GTPase homolog A4C RAB GTPase homolog A4A ras-related protein Rab11A ras-related protein Rab11A ras-related protein RGP1 ras-related protein Rab11D ras-related protein RGP1-like ras-related protein Rab11D uncharacterized LOC100283230 ras-related protein RABA4b ras-related protein RGP1 ras-related protein Rab11A-like ras-related protein RABA4d ras-related protein Rab11D ras-related protein Rab11A ras-related protein Rab11D ras-related protein RGP1 ras-related protein RGP1 ras-related protein Rab11D-like ras-related protein RABA4c ras-related protein RABA4c ras-related protein RABA4a ras-related protein Rab11D ras-related protein RGP1 ras-related protein Rab11D-like ras-related protein RABA4d ras-related protein RABA4c-like ras-related protein Rab11D ras-related protein RGP1 ras-related protein RGP1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 2
ath04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 2
gma00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 5
gma00670 One carbon pool by folate 5
gma01240 Biosynthesis of cofactors 5
gma01230 Biosynthesis of amino acids 4
gma00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa04144 Endocytosis 3
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa01250 Biosynthesis of nucleotide sugars 3
osa00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 4
zma04145 Phagosome 3
zma04517 IgSF CAM signaling 3
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 5
zma04144 Endocytosis 4
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 4
bra04517 IgSF CAM signaling 4
bra04814 Motor proteins 4
bra00520 Amino sugar and nucleotide sugar metabolism 3
bra00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo03013 Nucleocytoplasmic transport 2
ppo04144 Endocytosis 2
ppo00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 3
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00030 Pentose phosphate pathway 4
tae00480 Glutathione metabolism 4
tae01200 Carbon metabolism 4
tae00600 Sphingolipid metabolism 3
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 3
hvu01250 Biosynthesis of nucleotide sugars 3
hvu03015 mRNA surveillance pathway 2
hvu04382 Cornified envelope formation 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi04016 MAPK signaling pathway - plant 4
ghi04070 Phosphatidylinositol signaling system 4
ghi04075 Plant hormone signal transduction 4
ghi04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04070 Phosphatidylinositol signaling system 4
ghi04075 Plant hormone signal transduction 4
ghi04626 Plant-pathogen interaction 4
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 4
sbi04141 Protein processing in endoplasmic reticulum 3
sbi03010 Ribosome 2
sbi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00040 Pentose and glucuronate interconversions 2
sot00052 Galactose metabolism 2
sot00500 Starch and sucrose metabolism 2
sot00520 Amino sugar and nucleotide sugar metabolism 2
sot00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit00270 Cysteine and methionine metabolism 3
cit00670 One carbon pool by folate 2
cit00999 Biosynthesis of various plant secondary metabolites 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 3
cit04145 Phagosome 3
cit04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 7
nta03272 Virion - Hepatitis viruses 4
nta03250 Viral life cycle - HIV-1 2
nta00965 Betalain biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834847 836652 100791062 547878 101264460 4348493 4346614 100285194 100283230 103854349 100246065 100262838 7480096 7466795 11417615 123117867 123120992 123452574 123428862 107930116 107900727 106441256 8155288 8063474 102591246 102607112 102627675 100828714 100828334 107807251
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