Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PHYA   phytochrome A 
 ath-r.7   PHYA   phytochrome A 
 ath-m.9   PHYA   phytochrome A 
 ath-e.2   PHYA   phytochrome A 
 ath-m.4.bio   PHYA   phytochrome A 
 ath-m.4.hor   PHYA   phytochrome A 
 ath-m.4.lig   PHYA   phytochrome A 
 ath-m.4.str   PHYA   phytochrome A 
 ath-m.4.tis   PHYA   phytochrome A 
 ath-u.5   PHYC   phytochrome C 
 gma-u.5   E4   phytochrome A 
 gma-u.5   PHYA   phytochrome A 
 gma-u.5   PHYA3   phytochrome A-2-like 
 vvi-u.5   100258014   phytochrome C 
 vvi-u.5   PHYA   phytochrome A 
 ppo-u.5   7482219   phytochrome A 
 mtr-u.5   11405950   phytochrome A 
 sly-u.5   phyA   Phytochrome A 
 sly-u.5   PHYF   phytochrome F 
 osa-u.5   4333930   phytochrome A-like 
 osa-u.5   4334135   phytochrome C-like 
 zma-u.5   115101004   uncharacterized LOC115101004 
 zma-u.5   103643916   phytochrome A-like 
 zma-u.5   103644014   phytochrome C 

close


Top 50 coexpressed genes to PHYA (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to PHYA (ath-u.5 coexpression data)

CoexMap"837483"


athPHYA | Entrez gene ID : 837483      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 10 3 2 1 1 2 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0010203 [list] [network] response to very low fluence red light stimulus  (1 genes)  IMP  
GO:0010201 [list] [network] response to continuous far red light stimulus by the high-irradiance response system  (2 genes)  IMP  
GO:0009584 [list] [network] detection of visible light  (5 genes)  IEA  
GO:0010161 [list] [network] red light signaling pathway  (10 genes)  IMP  
GO:0017148 [list] [network] negative regulation of translation  (11 genes)  IMP  
GO:0046685 [list] [network] response to arsenic-containing substance  (19 genes)  IMP  
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  IEA  
GO:0009638 [list] [network] phototropism  (26 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IDA ISS  
GO:0009640 [list] [network] photomorphogenesis  (77 genes)  IMP  
GO:0009630 [list] [network] gravitropism  (101 genes)  IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0016604 [list] [network] nuclear body  (91 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0031516 [list] [network] far-red light photoreceptor activity  (2 genes)  IMP  
GO:0009883 [list] [network] red or far-red light photoreceptor activity  (3 genes)  TAS  
GO:0000155 [list] [network] phosphorelay sensor kinase activity  (9 genes)  IEA  
GO:0004673 [list] [network] protein histidine kinase activity  (17 genes)  ISS  
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IEA  
GO:0042802 [list] [network] identical protein binding  (414 genes)  IPI  
GO:0004672 [list] [network] protein kinase activity  (737 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001117256.1 [sequence] [blastp]
NP_001322906.1 [sequence] [blastp]
NP_001322907.1 [sequence] [blastp]
NP_001322908.1 [sequence] [blastp]
NP_001322909.1 [sequence] [blastp]
NP_172428.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_pero 2,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001117256.1)
nucl 4,  cyto 2,  nucl_plas 2,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_001322906.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_001322907.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_001322908.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_001322909.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_172428.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for NP_001117256.1)
chlo 5,  mito 3  (predict for NP_001322906.1)
mito 5,  chlo 4  (predict for NP_001322907.1)
mito 5,  chlo 4  (predict for NP_001322908.1)
mito 5,  chlo 4  (predict for NP_001322909.1)
mito 5,  chlo 4  (predict for NP_172428.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PHYA

.
ath-r.7
for
PHYA

.
ath-m.9
for
PHYA

.
ath-e.2
for
PHYA

.
ath-m.4.bio
for
PHYA

.
ath-m.4.hor
for
PHYA

.
ath-m.4.lig
for
PHYA

.
ath-m.4.str
for
PHYA

.
ath-m.4.tis
for
PHYA

.
ath-u.5
for
PHYC

.
gma-u.5
for
E4

.
gma-u.5
for
PHYA

.
gma-u.5
for
PHYA3

.
vvi-u.5
for
100258014

.
vvi-u.5
for
PHYA

.
ppo-u.5
for
7482219

.
mtr-u.5
for
11405950

.
sly-u.5
for
phyA

.
sly-u.5
for
PHYF

.
osa-u.5
for
4333930

.
osa-u.5
for
4334135

.
zma-u.5
for
115101004

.
zma-u.5
for
103643916

.
zma-u.5
for
103644014

.


Ortholog ID: 3383
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol PHYC PHYA PHYA3 PHYA PHYF phyA LOC4334135 LOC4333930 LOC103643916 LOC115101004 LOC103843346 LOC103868296 PHYA LOC100258014 LOC7482219 LOC11405950 LOC123105051 LOC123113346 LOC123452263 LOC123447547 LOC107923974 LOC107912456 LOC106346267 LOC106417700 LOC8059991 LOC8086232 C-PHYA LOC102595581 LOC102618478 LOC102616503 LOC100834357 LOC100836209 LOC107773723 LOC107827766
Function* phytochrome C phytochrome A phytochrome A-2-like phytochrome A phytochrome F Phytochrome A phytochrome C-like phytochrome A-like phytochrome A-like uncharacterized LOC115101004 phytochrome A phytochrome C phytochrome A phytochrome C phytochrome A phytochrome A phytochrome C phytochrome C phytochrome C phytochrome A type 3 phytochrome C-like phytochrome C phytochrome A phytochrome A phytochrome a phytochrome C type A phytochrome phytochrome C phytochrome C phytochrome A-2 phytochrome C phytochrome A type 3 phytochrome C phytochrome A1-like
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
zma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 3
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00460 Cyanoamino acid metabolism 4
sbi00500 Starch and sucrose metabolism 4
sbi00999 Biosynthesis of various plant secondary metabolites 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot04712 Circadian rhythm - plant 2
sot04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta04148 Efferocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833570 837483 100791098 547810 101259349 544176 4334135 4333930 103643916 115101004 103843346 103868296 100240824 100258014 7482219 11405950 123105051 123113346 123452263 123447547 107923974 107912456 106346267 106417700 8059991 8086232 102577627 102595581 102618478 102616503 100834357 100836209 107773723 107827766
The preparation time of this page was 0.2 [sec].