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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G22860   Vacuolar sorting protein 39 
 ath-r.7   AT1G22860   Vacuolar sorting protein 39 
 ath-m.9   AT1G22860   Vacuolar sorting protein 39 
 ath-e.2   AT1G22860   Vacuolar sorting protein 39 
 ath-m.4.bio   AT1G22860   Vacuolar sorting protein 39 
 ath-m.4.hor   AT1G22860   Vacuolar sorting protein 39 
 ath-m.4.lig   AT1G22860   Vacuolar sorting protein 39 
 ath-m.4.str   AT1G22860   Vacuolar sorting protein 39 
 ath-m.4.tis   AT1G22860   Vacuolar sorting protein 39 
 bra-r.6   103840821   vacuolar sorting protein 3 
 bna-r.1   106400910   vacuolar sorting protein 3 
 bna-r.1   106429786   vacuolar sorting protein 3 
 ghi-r.1   107916434   vacuolar sorting protein 3 
 cit-r.1   102615461   vacuolar sorting protein 3 
 gma-u.5   100819895   vacuolar sorting protein 3 
 gma-u.5   100777041   vacuolar sorting protein 3 
 vvi-u.5   100251277   vacuolar sorting protein 3 
 ppo-u.5   18097065   vacuolar sorting protein 3 
 ppo-u.5   18094463   vacuolar sorting protein 3 
 mtr-u.5   25500269   vacuolar sorting protein 3 
 sly-u.5   101266820   vacuolar sorting protein 3 
 sot-r.1   102605531   transforming growth factor-beta receptor-associated protein 1-like 
 nta-r.1   107796837   vacuolar sorting protein 3 
 nta-r.1   107801254   vacuolar sorting protein 3 
 osa-u.5   4337547   vacuolar sorting protein 3 
 zma-u.5   103629298   uncharacterized LOC103629298 
 tae-r.2   123179815   vacuolar sorting protein 3 
 tae-r.2   123103229   vacuolar sorting protein 3 
 tae-r.2   123185130   vacuolar sorting protein 3 
 hvu-r.1   123427537   vacuolar sorting protein 3 
 sbi-r.1   8065281   transforming growth factor-beta receptor-associated protein 1 
 bdi-r.1   100836335   transforming growth factor-beta receptor-associated protein 1 
 cre-r.1   CHLRE_17g709400v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G22860 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G22860 (ath-u.5 coexpression data)

CoexMap"838891"


athAT1G22860 | Entrez gene ID : 838891      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 1 1 2 1 2 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04148 [list] [network] Efferocytosis (53 genes)
GO BP
GO:0010015 [list] [network] root morphogenesis  (324 genes)  IMP  
GO CC
GO:0033263 [list] [network] CORVET complex  (6 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001319063.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 1,  nucl 1,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for NP_001319063.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001319063.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G22860
ath-r.7
for
AT1G22860
ath-m.9
for
AT1G22860
ath-e.2
for
AT1G22860
ath-m.4.bio
for
AT1G22860
ath-m.4.hor
for
AT1G22860
ath-m.4.lig
for
AT1G22860
ath-m.4.str
for
AT1G22860
ath-m.4.tis
for
AT1G22860
bra-r.6
for
103840821
bna-r.1
for
106400910
bna-r.1
for
106429786
ghi-r.1
for
107916434
cit-r.1
for
102615461
gma-u.5
for
100819895
gma-u.5
for
100777041
vvi-u.5
for
100251277
ppo-u.5
for
18097065
ppo-u.5
for
18094463
mtr-u.5
for
25500269
sly-u.5
for
101266820
sot-r.1
for
102605531
nta-r.1
for
107796837
nta-r.1
for
107801254
osa-u.5
for
4337547
zma-u.5
for
103629298
tae-r.2
for
123179815
tae-r.2
for
123103229
tae-r.2
for
123185130
hvu-r.1
for
123427537
sbi-r.1
for
8065281
bdi-r.1
for
100836335
cre-r.1
for
CHLRE_17g709400v5


Ortholog ID: 10470
Species ath bra bna bna ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT1G22860 LOC103840821 LOC106400910 LOC106429786 LOC107916434 LOC102615461 LOC100819895 LOC100777041 LOC100251277 LOC18097065 LOC18094463 LOC25500269 LOC101266820 LOC102605531 LOC107796837 LOC107801254 LOC4337547 LOC103629298 LOC123179815 LOC123103229 LOC123185130 LOC123427537 LOC8065281 LOC100836335 CHLRE_17g709400v5
Function* Vacuolar sorting protein 39 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 transforming growth factor-beta receptor-associated protein 1-like vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 uncharacterized LOC103629298 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 vacuolar sorting protein 3 transforming growth factor-beta receptor-associated protein 1 transforming growth factor-beta receptor-associated protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 4
bna04070 Phosphatidylinositol signaling system 4
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma03040 Spliceosome 3
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04148 Efferocytosis 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
nta00510 N-Glycan biosynthesis 4
nta04141 Protein processing in endoplasmic reticulum 4
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 2
nta03082 ATP-dependent chromatin remodeling 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta04148 Efferocytosis 2
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 7
zma03420 Nucleotide excision repair 3
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 6
tae03250 Viral life cycle - HIV-1 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838891 103840821 106400910 106429786 107916434 102615461 100819895 100777041 100251277 18097065 18094463 25500269 101266820 102605531 107796837 107801254 4337547 103629298 123179815 123103229 123185130 123427537 8065281 100836335 5717156
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