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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HFR1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-r.7   HFR1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.9   HFR1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-e.2   HFR1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.bio   HFR1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.hor   HFR1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.lig   HFR1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.str   HFR1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.tis   HFR1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 

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Top 50 coexpressed genes to HFR1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HFR1 (ath-u.5 coexpression data)

CoexMap"839300"


athHFR1 | Entrez gene ID : 839300      
Species ath tae mtr osa zma bdi vvi sbi ppo bna sly nta cre sot hvu ghi gma cit bra
Paralog 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  TAS  
GO:0009785 [list] [network] blue light signaling pathway  (22 genes)  TAS  
GO:1902074 [list] [network] response to salt  (50 genes)  IEP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IDA  
GO:0009738 [list] [network] abscisic acid-activated signaling pathway  (111 genes)  IMP  
GO:0009642 [list] [network] response to light intensity  (168 genes)  IEP  
GO:0009408 [list] [network] response to heat  (271 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO:0007165 [list] [network] signal transduction  (1102 genes)  TAS  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM TAS  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (77 genes)  IMP  
GO:0046983 [list] [network] protein dimerization activity  (446 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001323315.1 [sequence] [blastp]
NP_563650.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001323315.1)
nucl 10  (predict for NP_563650.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001323315.1)
other 7  (predict for NP_563650.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HFR1

.
ath-r.7
for
HFR1

.
ath-m.9
for
HFR1

.
ath-e.2
for
HFR1

.
ath-m.4.bio
for
HFR1

.
ath-m.4.hor
for
HFR1

.
ath-m.4.lig
for
HFR1

.
ath-m.4.str
for
HFR1

.
ath-m.4.tis
for
HFR1

.


Ortholog ID: 26050
Species ath bra bna
Symbol HFR1 LOC103843761 LOC106352603
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor HFR1 transcription factor HFR1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 5
ath00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00591 Linoleic acid metabolism 4
bra00592 alpha-Linolenic acid metabolism 4
bra00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 6
bna04075 Plant hormone signal transduction 6
bna00380 Tryptophan metabolism 4
bna00908 Zeatin biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839300 103843761 106352603
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