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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G04880   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 ath-r.7   AT1G04880   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 ath-m.9   AT1G04880   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 ath-e.2   AT1G04880   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 ath-m.4.bio   AT1G04880   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 ath-m.4.hor   AT1G04880   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 ath-m.4.lig   AT1G04880   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 ath-m.4.str   AT1G04880   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 ath-m.4.tis   AT1G04880   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 ath-u.5   AT3G13350   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 ath-u.5   AT1G76110   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein 
 bra-r.6   103870177   high mobility group B protein 10 
 bra-r.6   103844207   high mobility group B protein 15 
 bna-r.1   106421682   high mobility group B protein 9 
 ghi-r.1   107887235   high mobility group B protein 15 
 ghi-r.1   107951367   high mobility group B protein 10 
 ghi-r.1   107902663   high mobility group B protein 9 
 cit-r.1   102625335   high mobility group B protein 9 
 cit-r.1   102622657   high mobility group B protein 10 
 cit-r.1   102613632   high mobility group B protein 15 
 gma-u.5   100784746   high mobility group B protein 9 
 gma-u.5   100783284   high mobility group B protein 15 
 gma-u.5   100793029   high mobility group B protein 10 
 vvi-u.5   100266033   high mobility group B protein 9 
 vvi-u.5   100260501   high mobility group B protein 15 
 vvi-u.5   100244598   high mobility group B protein 10 
 ppo-u.5   18107070   high mobility group B protein 15 
 ppo-u.5   18103569   high mobility group B protein 10 
 mtr-u.5   11414168   high mobility group B protein 10 
 mtr-u.5   11440754   high mobility group B protein 15 
 sly-u.5   101265586   high mobility group B protein 15 
 sly-u.5   101251156   high mobility group B protein 10 
 sly-u.5   101249807   high mobility group B protein 9 
 sot-r.1   102602134   high mobility group B protein 10 
 sot-r.1   102584805   high mobility group B protein 9 
 sot-r.1   102578765   high mobility group B protein 15-like 
 nta-r.1   107779738   high mobility group B protein 9 
 nta-r.1   107764183   high mobility group B protein 15-like 
 nta-r.1   107831352   high mobility group B protein 9 
 osa-u.5   4329340   high mobility group B protein 15 
 zma-u.5   100280617   HMG box family protein 
 zma-u.5   100277834   uncharacterized LOC100277834 
 tae-r.2   123144497   high mobility group B protein 9 
 tae-r.2   123127383   high mobility group B protein 9 
 tae-r.2   123137041   high mobility group B protein 9 
 hvu-r.1   123402051   high mobility group B protein 9-like 
 sbi-r.1   8084502   high mobility group B protein 15 
 bdi-r.1   100842658   high mobility group B protein 15 
 cre-r.1   CHLRE_13g571050v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G04880 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G04880 (ath-u.5 coexpression data)

CoexMap""


athAT1G04880 | Entrez gene ID : 839388      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 2 1 3 3 3 3 2 2 3 3 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein
KEGG
GO BP
GO:0009846 [list] [network] pollen germination  (77 genes)  IMP  
GO:0019760 [list] [network] glucosinolate metabolic process  (97 genes)  IMP  
GO:0009860 [list] [network] pollen tube growth  (151 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0090406 [list] [network] pollen tube  (111 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000400 [list] [network] four-way junction DNA binding  (2 genes)  IDA  
GO:0008134 [list] [network] transcription factor binding  (41 genes)  IPI  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
Protein NP_171980.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_171980.1)
Subcellular
localization
TargetP
other 5  (predict for NP_171980.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G04880
ath-r.7
for
AT1G04880
ath-m.9
for
AT1G04880
ath-e.2
for
AT1G04880
ath-m.4.bio
for
AT1G04880
ath-m.4.hor
for
AT1G04880
ath-m.4.lig
for
AT1G04880
ath-m.4.str
for
AT1G04880
ath-m.4.tis
for
AT1G04880
ath-u.5
for
AT3G13350
ath-u.5
for
AT1G76110
bra-r.6
for
103870177
bra-r.6
for
103844207
bna-r.1
for
106421682
ghi-r.1
for
107887235
ghi-r.1
for
107951367
ghi-r.1
for
107902663
cit-r.1
for
102625335
cit-r.1
for
102622657
cit-r.1
for
102613632
gma-u.5
for
100784746
gma-u.5
for
100783284
gma-u.5
for
100793029
vvi-u.5
for
100266033
vvi-u.5
for
100260501
vvi-u.5
for
100244598
ppo-u.5
for
18107070
ppo-u.5
for
18103569
mtr-u.5
for
11414168
mtr-u.5
for
11440754
sly-u.5
for
101265586
sly-u.5
for
101251156
sly-u.5
for
101249807
sot-r.1
for
102602134
sot-r.1
for
102584805
sot-r.1
for
102578765
nta-r.1
for
107779738
nta-r.1
for
107764183
nta-r.1
for
107831352
osa-u.5
for
4329340
zma-u.5
for
100280617
zma-u.5
for
100277834
tae-r.2
for
123144497
tae-r.2
for
123127383
tae-r.2
for
123137041
hvu-r.1
for
123402051
sbi-r.1
for
8084502
bdi-r.1
for
100842658
cre-r.1
for
CHLRE_13g571050v5

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Ortholog ID: 1577
Species ath ath bra ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol AT3G13350 AT1G76110 LOC103844207 LOC107951367 LOC107916804 LOC107919872 LOC102625335 LOC102622657 LOC102613632 LOC100784746 LOC100807028 LOC100789037 LOC100266033 LOC100260501 LOC100244598 LOC18103569 LOC7485626 LOC11414168 LOC11440754 LOC101265586 LOC101251156 LOC101249807 LOC102602134 LOC102584805 LOC102578765 LOC107831352 LOC107805066 LOC107803693 LOC4329340 LOC100280617 LOC100277834 LOC123144497 LOC123127383 LOC123137041 LOC123402051 LOC8084502 LOC100842658 CHLRE_13g571050v5
Function* HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein high mobility group B protein 15 high mobility group B protein 10 high mobility group B protein 15 high mobility group B protein 10 high mobility group B protein 9 high mobility group B protein 10 high mobility group B protein 15 high mobility group B protein 9 high mobility group B protein 15 high mobility group B protein 10-like high mobility group B protein 9 high mobility group B protein 15 high mobility group B protein 10 high mobility group B protein 10 high mobility group B protein 9 high mobility group B protein 10 high mobility group B protein 15 high mobility group B protein 15 high mobility group B protein 10 high mobility group B protein 9 high mobility group B protein 10 high mobility group B protein 9 high mobility group B protein 15-like high mobility group B protein 9 high mobility group B protein 15 high mobility group B protein 10-like high mobility group B protein 15 HMG box family protein uncharacterized LOC100277834 high mobility group B protein 9 high mobility group B protein 9 high mobility group B protein 9 high mobility group B protein 9-like high mobility group B protein 15 high mobility group B protein 15 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
ath00030 Pentose phosphate pathway 2
ath01200 Carbon metabolism 2
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00010 Glycolysis / Gluconeogenesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma01230 Biosynthesis of amino acids 4
gma00030 Pentose phosphate pathway 3
gma00710 Carbon fixation by Calvin cycle 3
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 3
gma04626 Plant-pathogen interaction 2
gma04712 Circadian rhythm - plant 2
gma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 3
vvi00260 Glycine, serine and threonine metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04148 Efferocytosis 2
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 6
sly00260 Glycine, serine and threonine metabolism 5
sly00630 Glyoxylate and dicarboxylate metabolism 4
sly01230 Biosynthesis of amino acids 4
sly00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
sot00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae00030 Pentose phosphate pathway 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 4
bdi01240 Biosynthesis of cofactors 3
bdi01230 Biosynthesis of amino acids 3
bdi00051 Fructose and mannose metabolism 2
bdi00790 Folate biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820535 843943 103844207 107951367 107916804 107919872 102625335 102622657 102613632 100784746 100807028 100789037 100266033 100260501 100244598 18103569 7485626 11414168 11440754 101265586 101251156 101249807 102602134 102584805 102578765 107831352 107805066 107803693 4329340 100280617 100277834 123144497 123127383 123137041 123402051 8084502 100842658 5719135
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