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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G04790   RING/U-box superfamily protein 
 ath-r.7   AT1G04790   RING/U-box superfamily protein 
 ath-m.9   AT1G04790   RING/U-box superfamily protein 
 ath-e.2   AT1G04790   RING/U-box superfamily protein 
 ath-m.4.bio   AT1G04790   RING/U-box superfamily protein 
 ath-m.4.hor   AT1G04790   RING/U-box superfamily protein 
 ath-m.4.lig   AT1G04790   RING/U-box superfamily protein 
 ath-m.4.str   AT1G04790   RING/U-box superfamily protein 
 ath-m.4.tis   AT1G04790   RING/U-box superfamily protein 
 gma-u.5   100789823   uncharacterized LOC100789823 
 gma-u.5   100796218   E3 ubiquitin-protein ligase RLIM 
 vvi-u.5   100247656   uncharacterized LOC100247656 
 ppo-u.5   7493196   uncharacterized LOC7493196 
 mtr-u.5   25483106   E3 ubiquitin-protein ligase RNF12-A 
 sly-u.5   101256220   uncharacterized LOC101256220 
 osa-u.5   4336379   uncharacterized LOC4336379 
 zma-u.5   103164614   Putative RING zinc finger domain superfamily protein 

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Top 50 coexpressed genes to AT1G04790 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G04790 (ath-u.5 coexpression data)

CoexMap"839412"


athAT1G04790 | Entrez gene ID : 839412      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_563717.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_563717.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_563717.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G04790

.
ath-r.7
for
AT1G04790

.
ath-m.9
for
AT1G04790

.
ath-e.2
for
AT1G04790

.
ath-m.4.bio
for
AT1G04790

.
ath-m.4.hor
for
AT1G04790

.
ath-m.4.lig
for
AT1G04790

.
ath-m.4.str
for
AT1G04790

.
ath-m.4.tis
for
AT1G04790

.
gma-u.5
for
100789823

.
gma-u.5
for
100796218

.
vvi-u.5
for
100247656

.
ppo-u.5
for
7493196

.
mtr-u.5
for
25483106

.
sly-u.5
for
101256220

.
osa-u.5
for
4336379

.
zma-u.5
for
103164614

.


Ortholog ID: 8260
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G04790 LOC100796218 LOC100789823 LOC101256220 LOC4336379 LOC103164614 LOC103844217 LOC100247656 LOC7493196 LOC25483106 LOC123189911 LOC123054023 LOC123427226 LOC107915058 LOC107957080 LOC106401416 LOC106370977 CHLRE_01g051700v5 LOC8064467 LOC102579041 LOC102611427 LOC100837137 LOC107824910 LOC107807743
Function* RING/U-box superfamily protein E3 ubiquitin-protein ligase RLIM uncharacterized LOC100789823 uncharacterized LOC101256220 uncharacterized LOC4336379 Putative RING zinc finger domain superfamily protein zinc finger CCCH domain-containing protein 13 uncharacterized LOC100247656 uncharacterized LOC7493196 E3 ubiquitin-protein ligase RNF12-A E3 ubiquitin-protein ligase RNF12 uncharacterized LOC123054023 E3 ubiquitin-protein ligase RNF12-like uncharacterized LOC107915058 uncharacterized LOC107957080 E3 ubiquitin-protein ligase RLIM zinc finger CCCH domain-containing protein 13 uncharacterized protein uncharacterized LOC8064467 E3 ubiquitin-protein ligase RNF6 uncharacterized LOC102611427 uncharacterized LOC100837137 uncharacterized LOC107824910 uncharacterized LOC107807743
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo03083 Polycomb repressive complex 2
ppo03250 Viral life cycle - HIV-1 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00520 Amino sugar and nucleotide sugar metabolism 4
ghi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit00562 Inositol phosphate metabolism 2
cit04070 Phosphatidylinositol signaling system 2
cit04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 4
nta03250 Viral life cycle - HIV-1 4
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 4
nta03250 Viral life cycle - HIV-1 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839412 100796218 100789823 101256220 4336379 103164614 103844217 100247656 7493196 25483106 123189911 123054023 123427226 107915058 107957080 106401416 106370977 66052168 8064467 102579041 102611427 100837137 107824910 107807743
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