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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CRY2   cryptochrome 2 
 ath-r.7   CRY2   cryptochrome 2 
 ath-m.9   CRY2   cryptochrome 2 
 ath-e.2   CRY2   cryptochrome 2 
 ath-m.4.bio   CRY2   cryptochrome 2 
 ath-m.4.hor   CRY2   cryptochrome 2 
 ath-m.4.lig   CRY2   cryptochrome 2 
 ath-m.4.str   CRY2   cryptochrome 2 
 ath-m.4.tis   CRY2   cryptochrome 2 
 ath-u.5   CRY1   cryptochrome 1 
 gma-u.5   CRY1a   cryptochrome 1 
 gma-u.5   100786551   cryptochrome-1-like 
 gma-u.5   100797839   cryptochrome-1-like 
 vvi-u.5   100254022   cryptochrome-1 
 vvi-u.5   100247664   cryptochrome-1 
 ppo-u.5   7486597   cryptochrome-1 
 ppo-u.5   18102473   cryptochrome-1 
 ppo-u.5   7495156   cryptochrome-1 
 mtr-u.5   11418875   cryptochrome-1 
 mtr-u.5   25484452   cryptochrome-1 
 mtr-u.5   11428875   cryptochrome-1 
 sly-u.5   Cry1b   cryptochrome 1b 
 sly-u.5   CRY2   cryptochrome 2 
 sly-u.5   CRY1a   cryptochrome 1 
 osa-u.5   9270575   cryptochrome-1 
 osa-u.5   4329738   cryptochrome-1 
 osa-u.5   4336008   cryptochrome-1 
 zma-u.5   100502533   cryptochrome 2 
 zma-u.5   100194126   cryptochrome2 

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Top 50 coexpressed genes to CRY2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CRY2 (ath-u.5 coexpression data)

CoexMap"839529"


athCRY2 | Entrez gene ID : 839529      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 10 3 2 3 3 3 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0010617 [list] [network] circadian regulation of calcium ion oscillation  (3 genes)  IMP  
GO:0072387 [list] [network] flavin adenine dinucleotide metabolic process  (5 genes)  IMP  
GO:0010244 [list] [network] response to low fluence blue light stimulus by blue low-fluence system  (9 genes)  IEP IMP  
GO:1902347 [list] [network] response to strigolactone  (9 genes)  IMP  
GO:2000379 [list] [network] positive regulation of reactive oxygen species metabolic process  (10 genes)  IDA  
GO:1901371 [list] [network] regulation of leaf morphogenesis  (18 genes)  IMP  
GO:0048574 [list] [network] long-day photoperiodism, flowering  (20 genes)  IMP  
GO:0009785 [list] [network] blue light signaling pathway  (22 genes)  IGI  
GO:0009638 [list] [network] phototropism  (26 genes)  IGI IMP  
GO:0009911 [list] [network] positive regulation of flower development  (44 genes)  IMP  
GO:0051607 [list] [network] defense response to virus  (55 genes)  IMP  
GO:0009646 [list] [network] response to absence of light  (58 genes)  IEP  
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  IMP  
GO:0010118 [list] [network] stomatal movement  (63 genes)  IGI  
GO:0010075 [list] [network] regulation of meristem growth  (75 genes)  IGI  
GO:0009637 [list] [network] response to blue light  (94 genes)  IDA IEP IMP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (101 genes)  IDA  
GO:0046777 [list] [network] protein autophosphorylation  (119 genes)  IDA  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP  
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IDA  
GO:0006338 [list] [network] chromatin remodeling  (210 genes)  IMP  
GO:0006325 [list] [network] chromatin organization  (231 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IGI  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IEP IMP  
GO CC
GO:0016604 [list] [network] nuclear body  (91 genes)  IDA IMP  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0009882 [list] [network] blue light photoreceptor activity  (5 genes)  ISS  
GO:0071949 [list] [network] FAD binding  (44 genes)  IDA  
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IPI  
GO:0005524 [list] [network] ATP binding  (321 genes)  IDA  
GO:0042802 [list] [network] identical protein binding  (414 genes)  IPI  
GO:0016301 [list] [network] kinase activity  (1055 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_171935.1 [sequence] [blastp]
NP_849588.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_171935.1)
cyto 4,  nucl 3,  mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_849588.1)
Subcellular
localization
TargetP
other 7  (predict for NP_171935.1)
other 7  (predict for NP_849588.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CRY2
ath-r.7
for
CRY2
ath-m.9
for
CRY2
ath-e.2
for
CRY2
ath-m.4.bio
for
CRY2
ath-m.4.hor
for
CRY2
ath-m.4.lig
for
CRY2
ath-m.4.str
for
CRY2
ath-m.4.tis
for
CRY2
ath-u.5
for
CRY1
gma-u.5
for
CRY1a
gma-u.5
for
100786551
gma-u.5
for
100797839
vvi-u.5
for
100254022
vvi-u.5
for
100247664
ppo-u.5
for
7486597
ppo-u.5
for
18102473
ppo-u.5
for
7495156
mtr-u.5
for
11418875
mtr-u.5
for
25484452
mtr-u.5
for
11428875
sly-u.5
for
Cry1b
sly-u.5
for
CRY2
sly-u.5
for
CRY1a
osa-u.5
for
9270575
osa-u.5
for
4329738
osa-u.5
for
4336008
zma-u.5
for
100502533
zma-u.5
for
100194126


Ortholog ID: 1712
Species ath ath bra bra bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol CRY1 CRY2 CRY1 LOC103836576 LOC111197715 LOC106422131 LOC107929100 LOC107905111 LOC102630424 LOC102609249 CRY1a LOC100233234 LOC100254022 LOC100247664 LOC7486597 LOC18102473 LOC11428875 LOC25484452 CRY2 Cry1b LOC102580483 LOC102583141 LOC107813393 LOC107830603 LOC4329738 LOC9270575 LOC100502533 LOC100277533 LOC100136971 LOC100136972 LOC123426879 LOC123406235 LOC110436666 LOC110435145 LOC100839051 LOC100838321 CHLRE_06g295200v5
Function* cryptochrome 1 cryptochrome 2 cryptochrome circadian clock 1 cryptochrome-2 cryptochrome-2 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome 1 cryptochrome 2 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome 2 cryptochrome 1b cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome 2 uncharacterized LOC100277533 cryptochrome-1 cryptochrome-1 cryptochrome-1-like cryptochrome-1 cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath00900 Terpenoid backbone biosynthesis 3
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi00062 Fatty acid elongation 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04148 Efferocytosis 2
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 2
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 3
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 8
tae00053 Ascorbate and aldarate metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi01200 Carbon metabolism 5
bdi04712 Circadian rhythm - plant 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04016 MAPK signaling pathway - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826470 839529 103838805 103836576 111197715 106422131 107929100 107905111 102630424 102609249 100233233 100233234 100254022 100247664 7486597 18102473 11428875 25484452 543596 543688 102580483 102583141 107813393 107830603 4329738 9270575 100502533 100277533 100136971 100136972 123426879 123406235 110436666 110435145 100839051 100838321 5727125
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