ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	LCR	Galactose oxidase/kelch repeat superfamily protein
ath-r.7	LCR	Galactose oxidase/kelch repeat superfamily protein
ath-m.9	LCR	Galactose oxidase/kelch repeat superfamily protein
ath-e.2	LCR	Galactose oxidase/kelch repeat superfamily protein
ath-m.4.bio	LCR	Galactose oxidase/kelch repeat superfamily protein
ath-m.4.hor	LCR	Galactose oxidase/kelch repeat superfamily protein
ath-m.4.lig	LCR	Galactose oxidase/kelch repeat superfamily protein
ath-m.4.str	LCR	Galactose oxidase/kelch repeat superfamily protein
ath-m.4.tis	LCR	Galactose oxidase/kelch repeat superfamily protein
gma-u.5	100810179	F-box only protein 6
gma-u.5	100800464	F-box only protein 6-like
gma-u.5	100795488	F-box only protein 6
vvi-u.5	100242085	F-box only protein 6
ppo-u.5	7481222	F-box only protein 6
ppo-u.5	7482789	F-box only protein 6
mtr-u.5	11444169	F-box only protein 6
sly-u.5	101246347	F-box only protein 6
osa-u.5	4327256	F-box only protein 6
zma-u.5	103636344	F-box only protein 6
zma-u.5	100193727	uncharacterized LOC100193727

Annotation

functional annotation

KEGG

GO BP

GO:0060776 [list] [network] simple leaf morphogenesis	(7 genes)	IMP
GO:0010305 [list] [network] leaf vascular tissue pattern formation	(29 genes)	IMP
GO:0010928 [list] [network] regulation of auxin mediated signaling pathway	(48 genes)	IMP

GO CC

GO:0005739 [list] [network] mitochondrion

(4244 genes)

ISM

GO MF

Protein

NP_564278.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, E.R. 1, cyto_E.R. 1

(predict for NP_564278.1)

Subcellular
localization
TargetP

chlo 4, other 4

(predict for NP_564278.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for LCR	ath-r.7 for LCR	ath-m.9 for LCR	ath-e.2 for LCR	ath-m.4.bio for LCR	ath-m.4.hor for LCR	ath-m.4.lig for LCR	ath-m.4.str for LCR	ath-m.4.tis for LCR	gma-u.5 for 100810179	gma-u.5 for 100800464	gma-u.5 for 100795488	vvi-u.5 for 100242085	ppo-u.5 for 7481222	ppo-u.5 for 7482789	mtr-u.5 for 11444169	sly-u.5 for 101246347	osa-u.5 for 4327256	zma-u.5 for 103636344	zma-u.5 for 100193727

Ortholog

Ortholog ID: 7436

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

LCR

Function^*

Galactose oxidase/kelch repeat superfamily protein

F-box only protein 6

uncharacterized LOC100193727

F-box only protein 6

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00010	Glycolysis / Gluconeogenesis	2
ath00052	Galactose metabolism	2
ath00500	Starch and sucrose metabolism	2
ath00520	Amino sugar and nucleotide sugar metabolism	2
ath01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00220	Arginine biosynthesis	2
bra01210	2-Oxocarboxylic acid metabolism	2
bra01230	Biosynthesis of amino acids	2
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00513	Various types of N-glycan biosynthesis	2
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00230	Purine metabolism	2
ppo00910	Nitrogen metabolism	2
ppo01310	Nitrogen cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2
nta04626	Plant-pathogen interaction	2
nta00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3
tae04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2
hvu04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

839623

103839047

103829071

106401800

106367329

107886430

107922299

102613477

100775721

100795488

100242085

7481222

7482789

11444169

101246347

102588258

107822920

4327256

103636344

100193727

123072053

123063142

123445271

8079816

100826741

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to LCR (ath-u.5 coexpression data)

Top 50 enrichment test to LCR (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	9	3	1	2	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to LCR (ath-u.5 coexpression data)

Top 50 enrichment test to LCR (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**