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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SAMBA   valine-tRNA ligase 
 ath-r.7   SAMBA   valine-tRNA ligase 
 ath-m.9   SAMBA   valine-tRNA ligase 
 ath-e.2   SAMBA   valine-tRNA ligase 
 ath-m.4.bio   SAMBA   valine-tRNA ligase 
 ath-m.4.hor   SAMBA   valine-tRNA ligase 
 ath-m.4.lig   SAMBA   valine-tRNA ligase 
 ath-m.4.str   SAMBA   valine-tRNA ligase 
 ath-m.4.tis   SAMBA   valine-tRNA ligase 
 bra-r.6   103847757   protein SAMBA 
 bna-r.1   125608741   protein SAMBA 
 bna-r.1   111216017   protein SAMBA-like 
 bna-r.1   106432385   protein SAMBA 
 ghi-r.1   107946764   protein SAMBA 
 ghi-r.1   107946676   protein SAMBA 
 cit-r.1   102622517   protein SAMBA 
 gma-u.5   100812279   protein SAMBA 
 gma-u.5   100795957   protein SAMBA 
 vvi-u.5   100244603   protein SAMBA 
 ppo-u.5   7456086   protein SAMBA 
 ppo-u.5   18094136   protein SAMBA 
 mtr-u.5   11420552   protein SAMBA 
 sly-u.5   101246949   protein SAMBA 
 sot-r.1   102579877   uncharacterized LOC102579877 
 nta-r.1   107766727   protein SAMBA-like 
 nta-r.1   107797914   protein SAMBA 
 osa-u.5   9269879   protein SAMBA 
 zma-u.5   100277622   uncharacterized LOC100277622 
 tae-r.2   123181476   protein SAMBA 
 tae-r.2   123125996   protein SAMBA 
 tae-r.2   123050380   protein SAMBA 
 hvu-r.1   123436354   protein SAMBA 
 sbi-r.1   110431257   uncharacterized LOC110431257 
 sbi-r.1   110434371   uncharacterized LOC110434371 
 sbi-r.1   8055596   uncharacterized LOC8055596 
 bdi-r.1   100839840   protein SAMBA 

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Top 50 coexpressed genes to SAMBA (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SAMBA (ath-u.5 coexpression data)

CoexMap"840123"


athSAMBA | Entrez gene ID : 840123      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 2 1 1 1 2 1 1 3 1 3 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045732 [list] [network] positive regulation of protein catabolic process  (8 genes)  IMP  
GO:0046621 [list] [network] negative regulation of organ growth  (8 genes)  IMP  
GO:0009556 [list] [network] microsporogenesis  (28 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO CC
GO MF
GO:0010997 [list] [network] anaphase-promoting complex binding  (1 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_564394.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_564394.1)
Subcellular
localization
TargetP
other 4  (predict for NP_564394.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SAMBA
ath-r.7
for
SAMBA
ath-m.9
for
SAMBA
ath-e.2
for
SAMBA
ath-m.4.bio
for
SAMBA
ath-m.4.hor
for
SAMBA
ath-m.4.lig
for
SAMBA
ath-m.4.str
for
SAMBA
ath-m.4.tis
for
SAMBA
bra-r.6
for
103847757
bna-r.1
for
125608741
bna-r.1
for
111216017
bna-r.1
for
106432385
ghi-r.1
for
107946764
ghi-r.1
for
107946676
cit-r.1
for
102622517
gma-u.5
for
100812279
gma-u.5
for
100795957
vvi-u.5
for
100244603
ppo-u.5
for
7456086
ppo-u.5
for
18094136
mtr-u.5
for
11420552
sly-u.5
for
101246949
sot-r.1
for
102579877
nta-r.1
for
107766727
nta-r.1
for
107797914
osa-u.5
for
9269879
zma-u.5
for
100277622
tae-r.2
for
123181476
tae-r.2
for
123125996
tae-r.2
for
123050380
hvu-r.1
for
123436354
sbi-r.1
for
110431257
sbi-r.1
for
110434371
sbi-r.1
for
8055596
bdi-r.1
for
100839840


Ortholog ID: 8728
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi sbi sbi bdi
Symbol SAMBA LOC103847757 LOC125608741 LOC111216017 LOC106432385 LOC107946764 LOC107946676 LOC102622517 LOC100812279 LOC100795957 LOC100244603 LOC7456086 LOC18094136 LOC11420552 LOC101246949 LOC102579877 LOC107766727 LOC107797914 LOC9269879 LOC100277622 LOC123181476 LOC123125996 LOC123050380 LOC123436354 LOC110431257 LOC110434371 LOC8055596 LOC100839840
Function* valine-tRNA ligase protein SAMBA protein SAMBA protein SAMBA-like protein SAMBA protein SAMBA protein SAMBA protein SAMBA protein SAMBA protein SAMBA protein SAMBA protein SAMBA protein SAMBA protein SAMBA protein SAMBA uncharacterized LOC102579877 protein SAMBA-like protein SAMBA protein SAMBA uncharacterized LOC100277622 protein SAMBA protein SAMBA protein SAMBA protein SAMBA uncharacterized LOC110431257 uncharacterized LOC110434371 uncharacterized LOC8055596 protein SAMBA
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 3
bna01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 3
bna01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 3
bna01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03050 Proteasome 3
ghi03040 Spliceosome 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi00061 Fatty acid biosynthesis 2
ghi01040 Biosynthesis of unsaturated fatty acids 2
ghi01212 Fatty acid metabolism 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 4
cit03060 Protein export 4
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03010 Ribosome 4
gma03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 3
vvi00051 Fructose and mannose metabolism 2
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi01250 Biosynthesis of nucleotide sugars 2
vvi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04130 SNARE interactions in vesicular transport 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot04016 MAPK signaling pathway - plant 4
sot04070 Phosphatidylinositol signaling system 4
sot04075 Plant hormone signal transduction 4
sot04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00510 N-Glycan biosynthesis 3
zma00513 Various types of N-glycan biosynthesis 3
zma04141 Protein processing in endoplasmic reticulum 3
zma04144 Endocytosis 2
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
tae04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
tae04130 SNARE interactions in vesicular transport 3
tae04145 Phagosome 3
tae04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 7
tae04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 6
sbi03020 RNA polymerase 5
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 6
sbi03020 RNA polymerase 5
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 6
sbi03020 RNA polymerase 5
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840123 103847757 125608741 111216017 106432385 107946764 107946676 102622517 100812279 100795957 100244603 7456086 18094136 11420552 101246949 102579877 107766727 107797914 9269879 100277622 123181476 123125996 123050380 123436354 110431257 110434371 8055596 100839840
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