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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HAF01   HAC13 protein (HAC13) 
 ath-r.7   HAF01   HAC13 protein (HAC13) 
 ath-m.9   HAF01   HAC13 protein (HAC13) 
 ath-e.2   HAF01   HAC13 protein (HAC13) 
 ath-m.4.bio   HAF01   HAC13 protein (HAC13) 
 ath-m.4.hor   HAF01   HAC13 protein (HAC13) 
 ath-m.4.lig   HAF01   HAC13 protein (HAC13) 
 ath-m.4.str   HAF01   HAC13 protein (HAC13) 
 ath-m.4.tis   HAF01   HAC13 protein (HAC13) 
 gma-u.5   100783866   transcription initiation factor TFIID subunit 1 
 gma-u.5   100780733   transcription initiation factor TFIID subunit 1 
 vvi-u.5   100254115   transcription initiation factor TFIID subunit 1 
 ppo-u.5   7486075   transcription initiation factor TFIID subunit 1 
 ppo-u.5   7472543   transcription initiation factor TFIID subunit 1 
 mtr-u.5   11409951   transcription initiation factor TFIID subunit 1 
 sly-u.5   101245072   transcription initiation factor TFIID subunit 1 
 osa-u.5   9266475   transcription initiation factor TFIID subunit 1-like 
 zma-u.5   103638720   transcription initiation factor TFIID subunit 1 

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Top 50 coexpressed genes to HAF01 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HAF01 (ath-u.5 coexpression data)

CoexMap"840169"


athHAF01 | Entrez gene ID : 840169      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO:0009294 [list] [network] DNA-mediated transformation  (26 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004402 [list] [network] histone acetyltransferase activity  (26 genes)  ISS  
Protein NP_174552.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1  (predict for NP_174552.1)
Subcellular
localization
TargetP
other 9  (predict for NP_174552.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HAF01

.
ath-r.7
for
HAF01

.
ath-m.9
for
HAF01

.
ath-e.2
for
HAF01

.
ath-m.4.bio
for
HAF01

.
ath-m.4.hor
for
HAF01

.
ath-m.4.lig
for
HAF01

.
ath-m.4.str
for
HAF01

.
ath-m.4.tis
for
HAF01

.
gma-u.5
for
100783866

.
gma-u.5
for
100780733

.
vvi-u.5
for
100254115

.
ppo-u.5
for
7486075

.
ppo-u.5
for
7472543

.
mtr-u.5
for
11409951

.
sly-u.5
for
101245072

.
osa-u.5
for
9266475

.
zma-u.5
for
103638720

.


Ortholog ID: 6003
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol HAF01 LOC100780733 LOC100783866 LOC101245072 LOC9266475 LOC103638720 LOC103833661 LOC103837543 LOC100254115 LOC7486075 LOC7472543 LOC11409951 LOC123164333 LOC123164334 LOC123413427 LOC123413429 LOC107914621 LOC107896800 LOC106433033 LOC106421599 CHLRE_03g175851v5 LOC8069327 LOC102580278 LOC102622749 LOC100835170 LOC107804451 LOC107813931
Function* HAC13 protein (HAC13) transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1-like transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1-like transcription initiation factor TFIID subunit 1-like transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1-like uncharacterized protein transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1 transcription initiation factor TFIID subunit 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 4
gma03040 Spliceosome 2
gma03015 mRNA surveillance pathway 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03022 Basal transcription factors 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 5
tae03082 ATP-dependent chromatin remodeling 3
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 5
tae03082 ATP-dependent chromatin remodeling 3
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04145 Phagosome 2
ghi00310 Lysine degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 2
ghi03083 Polycomb repressive complex 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04130 SNARE interactions in vesicular transport 2
cre03250 Viral life cycle - HIV-1 2
cre03272 Virion - Hepatitis viruses 2
cre04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 3
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03022 Basal transcription factors 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
nta03022 Basal transcription factors 2
nta04120 Ubiquitin mediated proteolysis 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
nta03022 Basal transcription factors 2
nta04120 Ubiquitin mediated proteolysis 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840169 100780733 100783866 101245072 9266475 103638720 103833661 103837543 100254115 7486075 7472543 11409951 123164333 123164334 123413427 123413429 107914621 107896800 106433033 106421599 5728857 8069327 102580278 102622749 100835170 107804451 107813931
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