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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G52620   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   AT1G52620   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   AT1G52620   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   AT1G52620   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   AT1G52620   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   AT1G52620   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   AT1G52620   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   AT1G52620   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   AT1G52620   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100800298   pentatricopeptide repeat-containing protein At1g52620 
 vvi-u.5   100853298   pentatricopeptide repeat-containing protein At1g52620 
 ppo-u.5   18094140   pentatricopeptide repeat-containing protein At1g52620 
 mtr-u.5   11433580   pentatricopeptide repeat-containing protein At1g52620 
 sly-u.5   101256668   pentatricopeptide repeat-containing protein At1g52620 
 osa-u.5   9267287   pentatricopeptide repeat-containing protein At1g52620 
 osa-u.5   9268419   pentatricopeptide repeat-containing protein At1g52620 
 zma-u.5   103654325   pentatricopeptide repeat-containing protein At1g52620 

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Top 50 coexpressed genes to AT1G52620 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G52620 (ath-u.5 coexpression data)

CoexMap"841694"


athAT1G52620 | Entrez gene ID : 841694      
Species ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 9 1 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032981 [list] [network] mitochondrial respiratory chain complex I assembly  (8 genes)  IMP  
GO:0000963 [list] [network] mitochondrial RNA processing  (26 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (195 genes)  IDA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:1990825 [list] [network] sequence-specific mRNA binding  (5 genes)  IDA  
Protein NP_175671.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  chlo_mito 4,  mito 3,  cyto_mito 1  (predict for NP_175671.1)
Subcellular
localization
TargetP
chlo 4,  mito 4  (predict for NP_175671.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G52620

.
ath-r.7
for
AT1G52620

.
ath-m.9
for
AT1G52620

.
ath-e.2
for
AT1G52620

.
ath-m.4.bio
for
AT1G52620

.
ath-m.4.hor
for
AT1G52620

.
ath-m.4.lig
for
AT1G52620

.
ath-m.4.str
for
AT1G52620

.
ath-m.4.tis
for
AT1G52620

.
gma-u.5
for
100800298

.
vvi-u.5
for
100853298

.
ppo-u.5
for
18094140

.
mtr-u.5
for
11433580

.
sly-u.5
for
101256668

.
osa-u.5
for
9267287

.
osa-u.5
for
9268419

.
zma-u.5
for
103654325

.


Ortholog ID: 11087
Species ath gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna sbi sot cit bdi nta nta
Symbol AT1G52620 LOC100800298 LOC101256668 LOC9267287 LOC9268419 LOC103654325 LOC103871201 LOC100853298 LOC18094140 LOC11433580 LOC123111256 LOC123120472 LOC123395299 LOC107897364 LOC107916341 LOC106402886 LOC8085614 LOC102595842 LOC102623768 LOC100822788 LOC107779851 LOC107772391
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620-like pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 pentatricopeptide repeat-containing protein At1g52620 uncharacterized LOC107779851 uncharacterized LOC107772391
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841694 100800298 101256668 9267287 9268419 103654325 103871201 100853298 18094140 11433580 123111256 123120472 123395299 107897364 107916341 106402886 8085614 102595842 102623768 100822788 107779851 107772391
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