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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G60200   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 
 ath-r.7   AT1G60200   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 
 ath-m.9   AT1G60200   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 
 ath-e.2   AT1G60200   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 
 ath-m.4.bio   AT1G60200   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 
 ath-m.4.hor   AT1G60200   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 
 ath-m.4.lig   AT1G60200   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 
 ath-m.4.str   AT1G60200   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 
 ath-m.4.tis   AT1G60200   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 
 gma-u.5   100809428   RNA-binding protein 25 
 gma-u.5   100803051   RNA-binding protein 25 
 vvi-u.5   100263874   RNA-binding motif protein 25 
 ppo-u.5   18101545   RNA-binding motif protein 25 
 ppo-u.5   7459056   RNA-binding motif protein 25 
 mtr-u.5   11405951   RNA-binding protein 25 
 sly-u.5   101253282   RNA-binding motif protein 25 
 osa-u.5   4345578   RNA-binding motif protein 25 
 zma-u.5   103653436   RNA-binding protein 25 
 zma-u.5   103643327   RNA-binding protein 25 

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Top 50 coexpressed genes to AT1G60200 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G60200 (ath-u.5 coexpression data)

CoexMap"842315"


athAT1G60200 | Entrez gene ID : 842315      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome  (12 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (185 genes)  IDA IMP  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
Protein NP_001321661.1 [sequence] [blastp]
NP_001321662.1 [sequence] [blastp]
NP_001321663.1 [sequence] [blastp]
NP_176226.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  cyto_mito 1  (predict for NP_001321661.1)
chlo 9,  nucl 1,  cyto_mito 1  (predict for NP_001321662.1)
chlo 9,  nucl 1,  cyto_mito 1  (predict for NP_001321663.1)
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_176226.3)
Subcellular
localization
TargetP
mito 5,  chlo 4  (predict for NP_001321661.1)
mito 5,  chlo 4  (predict for NP_001321662.1)
mito 5,  chlo 4  (predict for NP_001321663.1)
chlo 9,  other 4  (predict for NP_176226.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G60200
ath-r.7
for
AT1G60200
ath-m.9
for
AT1G60200
ath-e.2
for
AT1G60200
ath-m.4.bio
for
AT1G60200
ath-m.4.hor
for
AT1G60200
ath-m.4.lig
for
AT1G60200
ath-m.4.str
for
AT1G60200
ath-m.4.tis
for
AT1G60200
gma-u.5
for
100809428
gma-u.5
for
100803051
vvi-u.5
for
100263874
ppo-u.5
for
18101545
ppo-u.5
for
7459056
mtr-u.5
for
11405951
sly-u.5
for
101253282
osa-u.5
for
4345578
zma-u.5
for
103653436
zma-u.5
for
103643327


Ortholog ID: 8287
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol AT1G60200 LOC103829743 LOC125575168 LOC106396500 LOC107886664 LOC107909631 LOC102609677 LOC100809428 LOC100803051 LOC100263874 LOC18101545 LOC7459056 LOC11405951 LOC101253282 LOC102598264 LOC107763094 LOC107767286 LOC4345578 LOC103653436 LOC103643327 LOC123162187 LOC123154525 LOC123412430 LOC8075609 LOC100842258 CHLRE_08g375084v5
Function* splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein RNA-binding protein 25 RNA-binding protein 25-like RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding motif protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding motif protein 25 RNA-binding motif protein 25 RNA-binding motif protein 25 RNA-binding protein 25 RNA-binding motif protein 25 RNA-binding protein 25 RNA-binding motif protein 25 RNA-binding motif protein 25 RNA-binding motif protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842315 103829743 125575168 106396500 107886664 107909631 102609677 100809428 100803051 100263874 18101545 7459056 11405951 101253282 102598264 107763094 107767286 4345578 103653436 103643327 123162187 123154525 123412430 8075609 100842258 5719954
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