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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   MMD1   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.4.bio   MMD1   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.4.hor   MMD1   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.4.lig   MMD1   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.4.str   MMD1   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.4.tis   MMD1   RING/FYVE/PHD zinc finger superfamily protein 
 bna-r.1   106375767   PHD finger protein MALE MEIOCYTE DEATH 1-like 
 ghi-r.1   107896874   PHD finger protein At1g33420 
 ghi-r.1   107909144   PHD finger protein At1g33420 
 ghi-r.1   107914423   PHD finger protein At1g33420 
 cit-r.1   102621636   PHD finger protein MALE STERILITY 1 
 cit-r.1   102611326   PHD finger protein At1g33420 
 cit-r.1   102619384   PHD finger protein MALE MEIOCYTE DEATH 1 
 gma-u.5   100780558   PHD finger protein At1g33420 
 vvi-u.5   100256176   PHD finger protein At1g33420 
 ppo-u.5   112325574   PHD finger protein At1g33420 
 ppo-u.5   7488482   PHD finger protein At1g33420 
 mtr-u.5   11432915   PHD finger protein At1g33420 
 mtr-u.5   25484507   PHD finger protein At1g33420 
 sly-u.5   101251672   PHD finger protein At1g33420 
 sly-u.5   101244829   PHD finger protein MALE MEIOCYTE DEATH 1 
 sot-r.1   102593406   PHD finger protein At1g33420 
 osa-u.5   4333910   PHD finger protein MALE MEIOCYTE DEATH 1 
 osa-u.5   4350143   PHD finger protein At1g33420 
 osa-u.5   4325087   PHD finger protein At1g33420 
 zma-u.5   103643406   PHD finger protein MALE STERILITY 1-like 
 zma-u.5   100384509   PHD finger protein MALE MEIOCYTE DEATH 1 
 zma-u.5   103636430   PHD finger protein 
 tae-r.2   123071619   PHD finger protein At1g33420 
 tae-r.2   123062789   PHD finger protein At1g33420 
 hvu-r.1   123447517   PHD finger protein MALE MEIOCYTE DEATH 1-like 
 hvu-r.1   123447852   PHD finger protein At1g33420-like 
 hvu-r.1   123444744   PHD finger protein At1g33420 
 sbi-r.1   8063124   PHD finger protein At1g33420 
 sbi-r.1   8081023   PHD finger protein PERSISTENT TAPETAL CELL 1 
 bdi-r.1   100825045   PHD finger protein MALE MEIOCYTE DEATH 1 
 bdi-r.1   100842633   PHD finger protein At1g33420 
 cre-r.1   CHLRE_03g148250v5   uncharacterized protein 

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Top 50 coexpressed genes to MMD1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to MMD1 (ath-m.9 coexpression data)

CoexMap"842932"


athMMD1 | Entrez gene ID : 842932      
Species ath bna ghi cit gma vvi ppo mtr sly sot osa zma tae hvu sbi bdi cre bra nta
Paralog 6 1 3 3 1 1 2 2 2 1 3 3 2 3 2 2 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007060 [list] [network] male meiosis chromosome segregation  (1 genes)  IMP  
GO:1905821 [list] [network] positive regulation of chromosome condensation  (2 genes)  IMP  
GO:0000212 [list] [network] meiotic spindle organization  (4 genes)  IGI  
GO:0010032 [list] [network] meiotic chromosome condensation  (4 genes)  IMP  
GO:0007140 [list] [network] male meiotic nuclear division  (27 genes)  IMP  
GO:0048235 [list] [network] pollen sperm cell differentiation  (35 genes)  IMP  
GO:0010628 [list] [network] positive regulation of gene expression  (71 genes)  IMP  
GO:0051321 [list] [network] meiotic cell cycle  (135 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IMP  
GO CC
GO:0000791 [list] [network] euchromatin  (13 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:1990188 [list] [network] euchromatin binding  (3 genes)  IDA  
GO:0042393 [list] [network] histone binding  (50 genes)  IDA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IDA  
GO:0043565 [list] [network] sequence-specific DNA binding  (875 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_176791.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 3,  cyto_nucl 3,  chlo 2  (predict for NP_176791.2)
Subcellular
localization
TargetP
other 8  (predict for NP_176791.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
MMD1
ath-m.4.bio
for
MMD1
ath-m.4.hor
for
MMD1
ath-m.4.lig
for
MMD1
ath-m.4.str
for
MMD1
ath-m.4.tis
for
MMD1
bna-r.1
for
106375767
ghi-r.1
for
107896874
ghi-r.1
for
107909144
ghi-r.1
for
107914423
cit-r.1
for
102621636
cit-r.1
for
102611326
cit-r.1
for
102619384
gma-u.5
for
100780558
vvi-u.5
for
100256176
ppo-u.5
for
112325574
ppo-u.5
for
7488482
mtr-u.5
for
11432915
mtr-u.5
for
25484507
sly-u.5
for
101251672
sly-u.5
for
101244829
sot-r.1
for
102593406
osa-u.5
for
4333910
osa-u.5
for
4350143
osa-u.5
for
4325087
zma-u.5
for
103643406
zma-u.5
for
100384509
zma-u.5
for
103636430
tae-r.2
for
123071619
tae-r.2
for
123062789
hvu-r.1
for
123447517
hvu-r.1
for
123447852
hvu-r.1
for
123444744
sbi-r.1
for
8063124
sbi-r.1
for
8081023
bdi-r.1
for
100825045
bdi-r.1
for
100842633
cre-r.1
for
CHLRE_03g148250v5


Ortholog ID: 926
Species bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr sly sly sot nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC106375767 LOC106381338 LOC107909144 LOC107947027 LOC102621636 LOC102611326 LOC100780558 LOC100818189 LOC100256176 LOC100246638 LOC112325574 LOC7463016 LOC11432915 LOC101251672 LOC101257358 LOC102593406 LOC107813657 LOC4333910 LOC4350143 LOC103643406 LOC103636430 LOC100304316 LOC123062789 LOC123121697 LOC123079961 LOC123447852 LOC123444744 LOC8081023 LOC8060007 LOC100842633 LOC100840654 CHLRE_03g148250v5
Function* PHD finger protein MALE MEIOCYTE DEATH 1-like PHD finger protein MALE MEIOCYTE DEATH 1 PHD finger protein At1g33420 PHD finger protein MALE STERILITY 1 PHD finger protein MALE STERILITY 1 PHD finger protein At1g33420 PHD finger protein At1g33420 PHD finger protein At1g33420 PHD finger protein At1g33420 PHD finger protein At1g33420 PHD finger protein At1g33420 PHD finger protein At1g33420 PHD finger protein At1g33420 PHD finger protein At1g33420 PHD finger protein MALE STERILITY 1 PHD finger protein At1g33420 PHD finger protein At1g33420 PHD finger protein MALE MEIOCYTE DEATH 1 PHD finger protein At1g33420 PHD finger protein MALE STERILITY 1-like PHD finger protein PHD finger protein PHD finger protein At1g33420 PHD finger protein PERSISTENT TAPETAL CELL 1 PHD finger protein At1g33420 PHD finger protein At1g33420-like PHD finger protein At1g33420 PHD finger protein PERSISTENT TAPETAL CELL 1 PHD finger protein MALE MEIOCYTE DEATH 1 PHD finger protein At1g33420 PHD finger protein At1g33420 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 5
ghi04120 Ubiquitin mediated proteolysis 4
ghi04136 Autophagy - other 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00460 Cyanoamino acid metabolism 2
cit00500 Starch and sucrose metabolism 2
cit00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 3
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00920 Sulfur metabolism 3
sbi01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106375767 106381338 107909144 107947027 102621636 102611326 100780558 100818189 100256176 100246638 112325574 7463016 11432915 101251672 101257358 102593406 107813657 4333910 4350143 103643406 103636430 100304316 123062789 123121697 123079961 123447852 123444744 8081023 8060007 100842633 100840654 5721194
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