ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	sks5	SKU5 similar 5
ath-r.7	sks5	SKU5 similar 5
ath-m.9	sks5	SKU5 similar 5
ath-e.2	sks5	SKU5 similar 5
ath-m.4.bio	sks5	SKU5 similar 5
ath-m.4.hor	sks5	SKU5 similar 5
ath-m.4.lig	sks5	SKU5 similar 5
ath-m.4.str	sks5	SKU5 similar 5
ath-m.4.tis	sks5	SKU5 similar 5
ath-u.5	SKS6	SKU5-similar 6
ath-u.5	sks4	SKU5 similar 4
bra-r.6	103872836	L-ascorbate oxidase homolog
bra-r.6	103828100	L-ascorbate oxidase homolog
bra-r.6	103832065	L-ascorbate oxidase homolog
bna-r.1	106435528	L-ascorbate oxidase homolog
ghi-r.1	107916611	L-ascorbate oxidase homolog
ghi-r.1	107920953	L-ascorbate oxidase homolog
ghi-r.1	107922114	L-ascorbate oxidase homolog
cit-r.1	102631317	L-ascorbate oxidase homolog
cit-r.1	102628991	L-ascorbate oxidase homolog
cit-r.1	102625298	L-ascorbate oxidase homolog
gma-u.5	100797670	L-ascorbate oxidase homolog
gma-u.5	100812416	L-ascorbate oxidase homolog
gma-u.5	100815570	L-ascorbate oxidase homolog
vvi-u.5	100265895	L-ascorbate oxidase homolog
vvi-u.5	100260211	L-ascorbate oxidase homolog
vvi-u.5	100252389	L-ascorbate oxidase homolog
ppo-u.5	7458297	L-ascorbate oxidase homolog
ppo-u.5	18097367	L-ascorbate oxidase homolog
mtr-u.5	25482222	L-ascorbate oxidase homolog
mtr-u.5	25492860	L-ascorbate oxidase homolog
mtr-u.5	11444667	L-ascorbate oxidase homolog
sly-u.5	778302	multicopper oxidase-like protein
sly-u.5	101249255	L-ascorbate oxidase homolog
sly-u.5	101256306	L-ascorbate oxidase homolog
sot-r.1	102583585	L-ascorbate oxidase homolog
sot-r.1	102600563	L-ascorbate oxidase homolog
sot-r.1	102584139	L-ascorbate oxidase homolog
nta-r.1	107814493	L-ascorbate oxidase homolog
nta-r.1	107777935	L-ascorbate oxidase homolog
nta-r.1	107783759	L-ascorbate oxidase homolog
osa-u.5	4343356	L-ascorbate oxidase homolog
osa-u.5	4341847	L-ascorbate oxidase homolog
zma-u.5	103641985	L-ascorbate oxidase homolog
zma-u.5	100285637	L-ascorbate oxidase
zma-u.5	100281206	uncharacterized LOC100281206
tae-r.2	123058231	monocopper oxidase-like protein SKS1
tae-r.2	123046321	L-ascorbate oxidase homolog
tae-r.2	123044704	L-ascorbate oxidase homolog
hvu-r.1	123425925	L-ascorbate oxidase homolog
hvu-r.1	123411294	L-ascorbate oxidase homolog
sbi-r.1	8083212	L-ascorbate oxidase homolog
sbi-r.1	8080736	L-ascorbate oxidase homolog
bdi-r.1	100827042	L-ascorbate oxidase homolog
bdi-r.1	100835306	L-ascorbate oxidase homolog

Top 50 coexpressed genes to sks5 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to sks5 (ath-u.5 coexpression data)

CoexMap"843948"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0099503 [list] [network] secretory vesicle	(172 genes)	HDA
GO:0048046 [list] [network] apoplast	(340 genes)	HDA
GO:0009505 [list] [network] plant-type cell wall	(504 genes)	HDA
GO:0009506 [list] [network] plasmodesma	(874 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	RCA
GO:0005576 [list] [network] extracellular region	(3158 genes)	ISM

GO MF

Protein

NP_177743.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 3, vacu 2, plas 1, E.R. 1, E.R._plas 1

(predict for NP_177743.1)

Subcellular
localization
TargetP

scret 9

(predict for NP_177743.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for sks5	ath-r.7 for sks5	ath-m.9 for sks5	ath-e.2 for sks5	ath-m.4.bio for sks5	ath-m.4.hor for sks5	ath-m.4.lig for sks5	ath-m.4.str for sks5	ath-m.4.tis for sks5	ath-u.5 for SKS6	ath-u.5 for sks4	bra-r.6 for 103872836	bra-r.6 for 103828100	bra-r.6 for 103832065	bna-r.1 for 106435528	ghi-r.1 for 107916611	ghi-r.1 for 107920953	ghi-r.1 for 107922114	cit-r.1 for 102631317	cit-r.1 for 102628991	cit-r.1 for 102625298	gma-u.5 for 100797670	gma-u.5 for 100812416	gma-u.5 for 100815570	vvi-u.5 for 100265895	vvi-u.5 for 100260211	vvi-u.5 for 100252389	ppo-u.5 for 7458297	ppo-u.5 for 18097367	mtr-u.5 for 25482222	mtr-u.5 for 25492860	mtr-u.5 for 11444667	sly-u.5 for 778302	sly-u.5 for 101249255	sly-u.5 for 101256306	sot-r.1 for 102583585	sot-r.1 for 102600563	sot-r.1 for 102584139	nta-r.1 for 107814493	nta-r.1 for 107777935	nta-r.1 for 107783759	osa-u.5 for 4343356	osa-u.5 for 4341847	zma-u.5 for 103641985	zma-u.5 for 100285637	zma-u.5 for 100281206	tae-r.2 for 123058231	tae-r.2 for 123046321	tae-r.2 for 123044704	hvu-r.1 for 123425925	hvu-r.1 for 123411294	sbi-r.1 for 8083212	sbi-r.1 for 8080736	bdi-r.1 for 100827042	bdi-r.1 for 100835306

Ortholog

Ortholog ID: 579

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SKS6

sks4

sks9

Function^*

SKU5-similar 6

SKU5 similar 4

SKU5 similar 9

L-ascorbate oxidase homolog

multicopper oxidase-like protein

L-ascorbate oxidase homolog

L-ascorbate oxidase

uncharacterized LOC100281206

L-ascorbate oxidase homolog

monocopper oxidase-like protein SKS1

L-ascorbate oxidase homolog

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	3
cit04016	MAPK signaling pathway - plant	2
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00520	Amino sugar and nucleotide sugar metabolism	2
vvi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00040	Pentose and glucuronate interconversions	3
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04145	Phagosome	7
mtr04517	IgSF CAM signaling	7
mtr04814	Motor proteins	7
mtr00040	Pentose and glucuronate interconversions	2
mtr00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00520	Amino sugar and nucleotide sugar metabolism	3
sly01240	Biosynthesis of cofactors	2
sly01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00564	Glycerophospholipid metabolism	2
zma00565	Ether lipid metabolism	2
zma00590	Arachidonic acid metabolism	2
zma00591	Linoleic acid metabolism	2
zma00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

840792

828290

829999

103872836

103828100

103832065

106407194

106397459

106381391

107920953

107958278

107937572

102628991

102625298

102606900

100819758

100791301

100776222

100265895

100260211

100262423

7494670

7466803

25492860

11435802

25490285

778302

101256015

101250637

102583585

102584139

102601037

107792406

107812408

107812409

4343356

4341847

103641985

100285637

100281206

123052567

123167490

123069480

123425925

123411294

8083212

8080736

100827042

100835306

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	1	3	3	3	3	2	3	3	3	3	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to sks5 (ath-u.5 coexpression data)

Top 50 enrichment test to sks5 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**