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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   TSD2   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-r.7   TSD2   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.9   TSD2   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-e.2   TSD2   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.bio   TSD2   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.hor   TSD2   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.lig   TSD2   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.str   TSD2   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.tis   TSD2   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 gma-u.5   100812530   probable pectin methyltransferase QUA2 
 gma-u.5   100805992   probable pectin methyltransferase QUA2 
 gma-u.5   100795712   probable pectin methyltransferase QUA2 
 vvi-u.5   100262559   probable pectin methyltransferase QUA2 
 ppo-u.5   7461783   probable pectin methyltransferase QUA2 
 ppo-u.5   7486593   probable pectin methyltransferase QUA2 
 mtr-u.5   25489477   probable pectin methyltransferase QUA2 
 mtr-u.5   11436118   probable pectin methyltransferase QUA2 
 sly-u.5   101257558   probable pectin methyltransferase QUA2 
 osa-u.5   4330770   probable pectin methyltransferase QUA2 
 zma-u.5   103654244   probable pectin methyltransferase QUA2 
 zma-u.5   103627760   uncharacterized LOC103627760 

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Top 50 coexpressed genes to TSD2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TSD2 (ath-u.5 coexpression data)

CoexMap"844160"


athTSD2 | Entrez gene ID : 844160      
Species ath gma vvi ppo mtr sly osa zma nta bna tae bdi sot bra sbi hvu cit cre ghi
Paralog 9 3 1 2 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010289 [list] [network] homogalacturonan biosynthetic process  (3 genes)  IMP  
GO:0009735 [list] [network] response to cytokinin  (124 genes)  IMP  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO:0048367 [list] [network] shoot system development  (800 genes)  IMP  
GO CC
GO:0000138 [list] [network] Golgi trans cisterna  (87 genes)  HDA  
GO:0005802 [list] [network] trans-Golgi network  (279 genes)  HDA  
GO:0005768 [list] [network] endosome  (359 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0008168 [list] [network] methyltransferase activity  (188 genes)  IMP  
Protein NP_001154475.1 [sequence] [blastp]
NP_177948.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  plas 2,  chlo_mito 2  (predict for NP_001154475.1)
chlo 4,  nucl 3,  plas 2,  chlo_mito 2  (predict for NP_177948.3)
Subcellular
localization
TargetP
other 5  (predict for NP_001154475.1)
other 5  (predict for NP_177948.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
TSD2

.
ath-r.7
for
TSD2

.
ath-m.9
for
TSD2

.
ath-e.2
for
TSD2

.
ath-m.4.bio
for
TSD2

.
ath-m.4.hor
for
TSD2

.
ath-m.4.lig
for
TSD2

.
ath-m.4.str
for
TSD2

.
ath-m.4.tis
for
TSD2

.
gma-u.5
for
100812530

.
gma-u.5
for
100805992

.
gma-u.5
for
100795712

.
vvi-u.5
for
100262559

.
ppo-u.5
for
7461783

.
ppo-u.5
for
7486593

.
mtr-u.5
for
25489477

.
mtr-u.5
for
11436118

.
sly-u.5
for
101257558

.
osa-u.5
for
4330770

.
zma-u.5
for
103654244

.
zma-u.5
for
103627760

.


Ortholog ID: 4480
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol TSD2 LOC100795712 LOC100805992 LOC101257558 LOC4330770 LOC103654244 LOC103830533 LOC103853118 LOC100262559 LOC7486593 LOC7461783 LOC25489477 LOC11436118 LOC123138347 LOC123145590 LOC123404113 LOC107957760 LOC107901463 LOC106354707 LOC106353443 LOC8075688 LOC102603054 LOC102626579 LOC100821410 LOC107770974 LOC107831723
Function* S-adenosyl-L-methionine-dependent methyltransferases superfamily protein probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 probable pectin methyltransferase QUA2 putative pectin methyltransferase QUA2 putative pectin methyltransferase QUA2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00520 Amino sugar and nucleotide sugar metabolism 4
sly01250 Biosynthesis of nucleotide sugars 3
sly01240 Biosynthesis of cofactors 3
sly00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00520 Amino sugar and nucleotide sugar metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00520 Amino sugar and nucleotide sugar metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 3
vvi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 4
mtr04075 Plant hormone signal transduction 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00520 Amino sugar and nucleotide sugar metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae00053 Ascorbate and aldarate metabolism 2
tae01240 Biosynthesis of cofactors 2
tae01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
hvu01230 Biosynthesis of amino acids 3
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844160 100795712 100805992 101257558 4330770 103654244 103830533 103853118 100262559 7486593 7461783 25489477 11436118 123138347 123145590 123404113 107957760 107901463 106354707 106353443 8075688 102603054 102626579 100821410 107770974 107831723
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