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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   BRG2   zinc ion binding protein 
 ath-r.7   BRG2   zinc ion binding protein 
 ath-m.9   BRG2   zinc ion binding protein 
 ath-e.2   BRG2   zinc ion binding protein 
 ath-m.4.bio   BRG2   zinc ion binding protein 
 ath-m.4.hor   BRG2   zinc ion binding protein 
 ath-m.4.lig   BRG2   zinc ion binding protein 
 ath-m.4.str   BRG2   zinc ion binding protein 
 ath-m.4.tis   BRG2   zinc ion binding protein 
 ath-u.5   BRG3   SBP (S-ribonuclease binding protein) family protein 
 ath-u.5   RING   SBP (S-ribonuclease binding protein) family protein 
 gma-u.5   100781461   BOI-related E3 ubiquitin-protein ligase 1 
 gma-u.5   100787292   probable BOI-related E3 ubiquitin-protein ligase 3 
 gma-u.5   100791833   BOI-related E3 ubiquitin-protein ligase 1 
 vvi-u.5   100245970   uncharacterized LOC100245970 
 vvi-u.5   100255881   probable BOI-related E3 ubiquitin-protein ligase 3 
 ppo-u.5   18095766   probable BOI-related E3 ubiquitin-protein ligase 3 
 ppo-u.5   7470973   probable BOI-related E3 ubiquitin-protein ligase 3 
 ppo-u.5   18103893   BOI-related E3 ubiquitin-protein ligase 1 
 mtr-u.5   120577745   probable BOI-related E3 ubiquitin-protein ligase 3 
 mtr-u.5   11445076   BOI-related E3 ubiquitin-protein ligase 1 
 mtr-u.5   11416407   probable BOI-related E3 ubiquitin-protein ligase 3 
 sly-u.5   101250858   BOI-related E3 ubiquitin-protein ligase 1 
 sly-u.5   101246293   BOI-related E3 ubiquitin-protein ligase 1 
 osa-u.5   4333676   BOI-related E3 ubiquitin-protein ligase 1 
 zma-u.5   100279034   uncharacterized LOC100279034 
 zma-u.5   100285989   uncharacterized LOC100285989 

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Top 50 coexpressed genes to BRG2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to BRG2 (ath-u.5 coexpression data)

CoexMap"844252"


athBRG2 | Entrez gene ID : 844252      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 11 3 2 3 3 2 1 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043067 [list] [network] regulation of programmed cell death  (84 genes)  IMP  
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_001322856.1 [sequence] [blastp]
NP_565200.1 [sequence] [blastp]
NP_974174.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001322856.1)
nucl 10  (predict for NP_565200.1)
nucl 10  (predict for NP_974174.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001322856.1)
chlo 5,  other 5  (predict for NP_565200.1)
chlo 5,  other 5  (predict for NP_974174.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
BRG2
ath-r.7
for
BRG2
ath-m.9
for
BRG2
ath-e.2
for
BRG2
ath-m.4.bio
for
BRG2
ath-m.4.hor
for
BRG2
ath-m.4.lig
for
BRG2
ath-m.4.str
for
BRG2
ath-m.4.tis
for
BRG2
ath-u.5
for
BRG3
ath-u.5
for
RING
gma-u.5
for
100781461
gma-u.5
for
100787292
gma-u.5
for
100791833
vvi-u.5
for
100245970
vvi-u.5
for
100255881
ppo-u.5
for
18095766
ppo-u.5
for
7470973
ppo-u.5
for
18103893
mtr-u.5
for
120577745
mtr-u.5
for
11445076
mtr-u.5
for
11416407
sly-u.5
for
101250858
sly-u.5
for
101246293
osa-u.5
for
4333676
zma-u.5
for
100279034
zma-u.5
for
100285989


Ortholog ID: 848
Species ath bra bra bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma zma tae hvu hvu sbi bdi
Symbol RING LOC103870210 LOC103859478 LOC111199241 LOC106437648 LOC107932689 LOC107891747 LOC102618190 LOC102615723 LOC100791833 LOC100797512 LOC100255881 LOC100245970 LOC18103893 LOC7457634 LOC11445076 LOC11416407 LOC101250858 LOC101246293 LOC102579240 LOC102579383 LOC107779863 LOC107808826 LOC4333676 LOC100285989 LOC100279034 LOC123166721 LOC123412998 LOC123412999 LOC8056736 LOC100837320
Function* SBP (S-ribonuclease binding protein) family protein probable BOI-related E3 ubiquitin-protein ligase 3 probable BOI-related E3 ubiquitin-protein ligase 3 probable BOI-related E3 ubiquitin-protein ligase 3 E3 ubiquitin-protein ligase BOI-like probable BOI-related E3 ubiquitin-protein ligase 3 E3 ubiquitin-protein ligase BOI BOI-related E3 ubiquitin-protein ligase 1 probable BOI-related E3 ubiquitin-protein ligase 3 BOI-related E3 ubiquitin-protein ligase 1 BOI-related E3 ubiquitin-protein ligase 1 probable BOI-related E3 ubiquitin-protein ligase 3 uncharacterized LOC100245970 BOI-related E3 ubiquitin-protein ligase 1 BOI-related E3 ubiquitin-protein ligase 1 BOI-related E3 ubiquitin-protein ligase 1 probable BOI-related E3 ubiquitin-protein ligase 3 BOI-related E3 ubiquitin-protein ligase 1 BOI-related E3 ubiquitin-protein ligase 1 probable BOI-related E3 ubiquitin-protein ligase 3 BOI-related E3 ubiquitin-protein ligase 1-like putative BOI-related E3 ubiquitin-protein ligase 3 BOI-related E3 ubiquitin-protein ligase 1-like BOI-related E3 ubiquitin-protein ligase 1 uncharacterized LOC100285989 uncharacterized LOC100279034 E3 ubiquitin-protein ligase BOI probable BOI-related E3 ubiquitin-protein ligase 3 probable BOI-related E3 ubiquitin-protein ligase 3 BOI-related E3 ubiquitin-protein ligase 1 probable BOI-related E3 ubiquitin-protein ligase 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 6
ath00941 Flavonoid biosynthesis 4
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 6
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04145 Phagosome 3
ppo04148 Efferocytosis 2
ppo04517 IgSF CAM signaling 2
ppo04518 Integrin signaling 2
ppo04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi01200 Carbon metabolism 5
bdi04146 Peroxisome 3
bdi00250 Alanine, aspartate and glutamate metabolism 2
bdi00260 Glycine, serine and threonine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827714 103870210 103859478 111199241 106437648 107932689 107891747 102618190 102615723 100791833 100797512 100255881 100245970 18103893 7457634 11445076 11416407 101250858 101246293 102579240 102579383 107779863 107808826 4333676 100285989 100279034 123166721 123412998 123412999 8056736 100837320
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