ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	9271665	protein DETOXIFICATION 45, chloroplastic
osa-r.6	9271665	protein DETOXIFICATION 45, chloroplastic
osa-m.8	9271665	protein DETOXIFICATION 45, chloroplastic
osa-e.1	9271665	protein DETOXIFICATION 45, chloroplastic
osa-u.5	107277806	protein DETOXIFICATION 42
osa-u.5	4347774	protein DETOXIFICATION 45, chloroplastic
osa-u.5	107275911	protein DETOXIFICATION 42
tae-r.2	123085162	protein DETOXIFICATION 42
tae-r.2	123060391	protein DETOXIFICATION 42
tae-r.2	123167888	protein DETOXIFICATION 45, chloroplastic
hvu-r.1	123406343	protein DETOXIFICATION 45, chloroplastic
bdi-r.1	100842762	protein DETOXIFICATION 42
bdi-r.1	100840460	uncharacterized LOC100840460
zma-u.5	103630881	uncharacterized LOC103630881
zma-u.5	100383875	multidrug and toxic compound extrusion3
zma-u.5	103633151	protein DETOXIFICATION 45, chloroplastic
sbi-r.1	8055496	protein DETOXIFICATION 44, chloroplastic
sbi-r.1	110433897	protein DETOXIFICATION 45, chloroplastic-like
sbi-r.1	8066525	protein DETOXIFICATION 45, chloroplastic
ath-u.5	AT2G38330	MATE efflux family protein
ath-u.5	FRD3	MATE efflux family protein
ath-u.5	AT4G38380	MATE efflux family protein
gma-u.5	FRD3a	ferric reductase defective 3a
gma-u.5	100797693	protein DETOXIFICATION 44, chloroplastic
gma-u.5	100805918	protein DETOXIFICATION 44, chloroplastic
sly-u.5	101258125	protein DETOXIFICATION 45, chloroplastic-like
sly-u.5	101252931	protein DETOXIFICATION 45, chloroplastic
sly-u.5	101250658	protein DETOXIFICATION 42
bra-r.6	103868577	protein DETOXIFICATION 42
bra-r.6	103832853	protein DETOXIFICATION 42
vvi-u.5	100267546	protein DETOXIFICATION 45, chloroplastic
vvi-u.5	100258511	MATE efflux family protein-like
ppo-u.5	7467364	protein DETOXIFICATION 42
ppo-u.5	7488720	protein DETOXIFICATION 44, chloroplastic
ppo-u.5	7482281	protein DETOXIFICATION 43
mtr-u.5	11412157	protein DETOXIFICATION 44, chloroplastic
mtr-u.5	11422671	protein DETOXIFICATION 42
mtr-u.5	11421059	protein DETOXIFICATION 45, chloroplastic
ghi-r.1	107891400	protein DETOXIFICATION 42
ghi-r.1	107902299	protein DETOXIFICATION 44, chloroplastic
ghi-r.1	107906529	protein DETOXIFICATION 43
bna-r.1	111198031	protein DETOXIFICATION 42-like
bna-r.1	125574806	protein DETOXIFICATION 42-like
bna-r.1	125580421	protein DETOXIFICATION 43-like
sot-r.1	102603217	protein DETOXIFICATION 44, chloroplastic
sot-r.1	102593991	protein DETOXIFICATION 42-like
sot-r.1	102592318	protein DETOXIFICATION 43-like
cit-r.1	102624252	protein DETOXIFICATION 45, chloroplastic-like
cit-r.1	102630831	protein DETOXIFICATION 42-like
nta-r.1	107780510	protein DETOXIFICATION 45, chloroplastic
nta-r.1	107762577	protein DETOXIFICATION 44, chloroplastic
nta-r.1	107771007	protein DETOXIFICATION 45, chloroplastic-like
cre-r.1	CHLRE_17g739650v5	uncharacterized protein
cre-r.1	CHLRE_08g369600v5	uncharacterized protein

Top 50 coexpressed genes to 9271665 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 9271665 (osa-u.5 coexpression data)

CoexMap"9271665"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0055085 [list] [network] transmembrane transport

(1003 genes)

IEA

GO CC

GO:0016020 [list] [network] membrane

(3446 genes)

IEA

GO MF

GO:0042910 [list] [network] xenobiotic transmembrane transporter activity	(53 genes)	IEA
GO:0015297 [list] [network] antiporter activity	(152 genes)	IEA

Protein

XP_025878807.1 [sequence] [blastp]
XP_025878808.1 [sequence] [blastp]
XP_066163389.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 4, chlo_mito 4	(predict for XP_025878807.1)
chlo 6, mito 1, vacu 1, cyto 1, extr 1, cyto_mito 1, E.R._vacu 1, mito_plas 1	(predict for XP_025878808.1)
chlo 4, plas 2, mito 1, extr 1, E.R._plas 1	(predict for XP_066163389.1)

Subcellular
localization
TargetP

chlo 9, mito 4	(predict for XP_025878807.1)
scret 8	(predict for XP_025878808.1)
mito 1	(predict for XP_066163389.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 9271665	osa-r.6 for 9271665	osa-m.8 for 9271665	osa-e.1 for 9271665	osa-u.5 for 107277806	osa-u.5 for 4347774	osa-u.5 for 107275911	tae-r.2 for 123085162	tae-r.2 for 123060391	tae-r.2 for 123167888	hvu-r.1 for 123406343	bdi-r.1 for 100842762	bdi-r.1 for 100840460	zma-u.5 for 103630881	zma-u.5 for 100383875	zma-u.5 for 103633151	sbi-r.1 for 8055496	sbi-r.1 for 110433897	sbi-r.1 for 8066525	ath-u.5 for AT2G38330	ath-u.5 for FRD3	ath-u.5 for AT4G38380	gma-u.5 for FRD3a	gma-u.5 for 100797693	gma-u.5 for 100805918	sly-u.5 for 101258125	sly-u.5 for 101252931	sly-u.5 for 101250658	bra-r.6 for 103868577	bra-r.6 for 103832853	vvi-u.5 for 100267546	vvi-u.5 for 100258511	ppo-u.5 for 7467364	ppo-u.5 for 7488720	ppo-u.5 for 7482281	mtr-u.5 for 11412157	mtr-u.5 for 11422671	mtr-u.5 for 11421059	ghi-r.1 for 107891400	ghi-r.1 for 107902299	ghi-r.1 for 107906529	bna-r.1 for 111198031	bna-r.1 for 125574806	bna-r.1 for 125580421	sot-r.1 for 102603217	sot-r.1 for 102593991	sot-r.1 for 102592318	cit-r.1 for 102624252	cit-r.1 for 102630831	nta-r.1 for 107780510	nta-r.1 for 107762577	nta-r.1 for 107771007	cre-r.1 for CHLRE_17g739650v5	cre-r.1 for CHLRE_08g369600v5

Ortholog

Ortholog ID: 361

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

FRD3

Function^*

protein DETOXIFICATION 45, chloroplastic

protein DETOXIFICATION 42

protein DETOXIFICATION 45, chloroplastic

protein DETOXIFICATION 44, chloroplastic-like

protein DETOXIFICATION 42

uncharacterized LOC100840460

protein DETOXIFICATION 45, chloroplastic

uncharacterized LOC103630881

uncharacterized LOC100501783

uncharacterized LOC100322876

protein DETOXIFICATION 45, chloroplastic-like

protein DETOXIFICATION 42

MATE efflux family protein

protein DETOXIFICATION 44, chloroplastic

protein DETOXIFICATION 45, chloroplastic

protein DETOXIFICATION 43

protein DETOXIFICATION 42-like

protein DETOXIFICATION 42

protein DETOXIFICATION 43

protein DETOXIFICATION 45, chloroplastic

protein DETOXIFICATION 42

protein DETOXIFICATION 43

protein DETOXIFICATION 45, chloroplastic

protein DETOXIFICATION 43

protein DETOXIFICATION 44, chloroplastic

protein DETOXIFICATION 42

protein DETOXIFICATION 43-like

protein DETOXIFICATION 45, chloroplastic

protein DETOXIFICATION 42

protein DETOXIFICATION 45, chloroplastic

protein DETOXIFICATION 43-like

protein DETOXIFICATION 44, chloroplastic

protein DETOXIFICATION 45, chloroplastic

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	4
osa00270	Cysteine and methionine metabolism	2
osa00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	2
osa00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	3
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	5
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	2
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00999	Biosynthesis of various plant secondary metabolites	3
gma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	4
sly04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00906	Carotenoid biosynthesis	2
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	3
ppo01200	Carbon metabolism	2
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00510	N-Glycan biosynthesis	4
bna00513	Various types of N-glycan biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00510	N-Glycan biosynthesis	4
bna00513	Various types of N-glycan biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00260	Glycine, serine and threonine metabolism	3
sot00470	D-Amino acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	3
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	2

Expression

Expression pattern

Entrez Gene ID^*

9271665

4332069

123137373

123182400

123140152

123406343

123448136

100842762

100840460

100836155

103630881

100501783

100322876

110433897

8085298

8074023

819995

829995

841557

100805918

100791044

100793398

101245696

101266441

103832853

103859257

100267546

100241685

7480083

7474953

7492133

11421059

11438253

25501046

107918626

107938337

107958084

106438154

106436116

106401813

102592318

102604703

102598780

102626459

102621711

107790395

107803740

107809556

5717394

5721723

The preparation time of this page was 2.4 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	7	3	1	2	3	3	3	3	3	2	2	3	3	3	3	3	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 9271665 (osa-u.5 coexpression data)

Top 50 enrichment test to 9271665 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**