Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   AT2G32640   Lycopene beta/epsilon cyclase protein 
 ath-u.4   AT2G32640   Lycopene beta/epsilon cyclase protein 
 ath-r.6   AT2G32640   Lycopene beta/epsilon cyclase protein 
 ath-m.9   AT2G32640   Lycopene beta/epsilon cyclase protein 
 ath-m.4.notissue   AT2G32640   Lycopene beta/epsilon cyclase protein 
 ath-m.4.tis   AT2G32640   Lycopene beta/epsilon cyclase protein 
 ath-m.4.str   AT2G32640   Lycopene beta/epsilon cyclase protein 
 ath-m.4.hor   AT2G32640   Lycopene beta/epsilon cyclase protein 
 ath-m.4.lig   AT2G32640   Lycopene beta/epsilon cyclase protein 
 ath-e.1   AT2G32640   Lycopene beta/epsilon cyclase protein 
 gma-u.4   100784275   uncharacterized LOC100784275 
 ppo-u.4   7468518   uncharacterized LOC7468518 
 mtr-u.4   25502625   uncharacterized LOC25502625 
 sly-u.4   101254642   uncharacterized LOC101254642 
 osa-u.4   4345597   uncharacterized LOC4345597 

close


Top 50 coexpressed genes to AT2G32640 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath860   Porphyrin metabolism  2 53 -
 ath30   Pentose phosphate pathway  2 58 -
 ath970   Aminoacyl-tRNA biosynthesis  2 199 -
 ath1230   Biosynthesis of amino acids  2 244 -
 ath1200   Carbon metabolism  2 273 -

close


ath:AT2G32640 (Lycopene beta/epsilon cyclase protein) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-m.4.bio
for
AT2G32640
ath-u.4
for
AT2G32640
ath-r.6
for
AT2G32640
ath-m.9
for
AT2G32640
ath-m.4.notissue
for
AT2G32640
ath-m.4.tis
for
AT2G32640
ath-m.4.str
for
AT2G32640
ath-m.4.hor
for
AT2G32640
ath-m.4.lig
for
AT2G32640
ath-e.1
for
AT2G32640
gma-u.4
for
100784275
ppo-u.4
for
7468518
mtr-u.4
for
25502625
sly-u.4
for
101254642
osa-u.4
for
4345597
1 CCB4 cofactor assembly of complex C 842278 At1g59840 4.8 4.7
 5.0
 3.1
 207.2
 2.7
 1.2
 2.4
 2.1
 2.4
 0.8
 1.8
 0.8
 1.7
 1.4
2 FtsHi1 FtsH extracellular protease family 828494 At4g23940 4.3 3.5
 4.0
 2.0
 63.6
 2.5
 2.3
 2.9
 1.8
 4.3
 0.6
 2.1
 1.1
 0.8
3 AT1G20810 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 838672 At1g20810 4.2 4.4
 4.3
 3.4
 39.4
 2.1
 3.4
 2.4
 1.5
 3.4
 2.1
 1.0
 1.2
 3.1
 -0.1
4 CHLI2 magnesium chelatase i2 834633 At5g45930 4.1 3.5
 3.5
 2.5
 203.4
 3.7
 1.9
 1.4
 1.9
 2.2
 1.6
0.7
 0.9
0.9
 0.6
-0.7
 1.4
 -0.7
5 AT1G49380 cytochrome c biogenesis protein family 841361 At1g49380 4.0 6.9
 8.0
 4.0
 20.0
 2.8
 3.4
 1.8
 2.6
 5.4
 2.0
 2.0
 0.3
 1.6
 0.7
6 APG3 Peptide chain release factor 1 825466 At3g62910 3.9 6.8
 7.1
 4.6
 24.0
 2.6
 1.9
 4.8
 2.2
 6.2
 3.0
2.5
 4.0
 1.3
 2.3
 2.2
7 AT5G17670 alpha/beta-Hydrolases superfamily protein 831633 At5g17670 3.8 5.4
 5.1
 4.3
 64.6
 3.7
 2.5
 2.5
 2.5
 4.2
 2.3
 1.0
 1.5
 5.2
 1.2
8 PPD5 PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 831016 At5g11450 3.8 3.5
 3.3
 2.8
 83.3
 3.4
 2.0
 2.1
 2.0
 2.7
 2.3
1.4
 -0.3
 1.4
 1.5
 -0.3
9 AK-HSDH II aspartate kinase-homoserine dehydrogenase ii 827715 At4g19710 3.8 2.9
 3.0
 2.1
 23.1
 1.7
 2.9
 2.9
 2.3
 1.5
 -0.1
-0.4
 -0.0
-0.3
 0.1
-0.5
 0.9
0.2
 0.6
-0.8
10 AT1G57770 FAD/NAD(P)-binding oxidoreductase family protein 842152 At1g57770 3.8 8.4
 7.5
 7.1
 14.0
 3.4
 2.9
 2.8
 4.6
 4.5
 3.6
 0.7
 2.4
 4.8
 2.1
11 AT1G80030 Molecular chaperone Hsp40/DnaJ family protein 844343 At1g80030 3.7 5.6
 5.1
 4.5
 2.5
 2.7
 4.2
 2.7
 1.9
 1.4
 1.3
 2.1
 2.3
 1.6
 0.3
12 PPD1 Photosystem II reaction center PsbP family protein 827223 At4g15510 3.7 5.0
 5.1
 3.6
 39.4
 2.2
 2.7
 2.3
 1.9
 3.0
 1.8
 -0.1
-0.9
 -0.3
 1.6
 1.2
1.2
13 AT5G44520 NagB/RpiA/CoA transferase-like superfamily protein 834479 At5g44520 3.7 3.8
 3.6
 2.9
 278.8
 2.0
 4.1
 1.8
 1.7
 0.3
 2.2
 1.4
 1.0
 1.5
14 AT3G28760 3-dehydroquinate synthase 822508 At3g28760 3.7 4.5
 4.5
 3.3
 47.6
 3.0
 2.3
 4.1
 1.0
 2.4
 1.1
 1.0
 0.9
 0.6
 0.1
15 AT5G07020 proline-rich family protein 830593 At5g07020 3.7 4.1
 4.7
 2.4
 97.1
 2.3
 2.6
 3.2
 2.9
 4.7
 2.7
1.7
 1.2
 2.7
 3.8
 0.4
16 AT5G55220 trigger factor type chaperone family protein 835615 At5g55220 3.7 3.5
 3.9
 2.1
 42.0
 2.7
 2.3
 3.1
 1.7
 3.6
 1.9
1.4
 1.7
 1.1
 -0.1
 1.9
17 SULA NAD(P)-binding Rossmann-fold superfamily protein 816667 At2g21280 3.7 7.6
 6.8
 6.4
 5.5
 2.8
 3.4
 4.9
 3.0
 6.0
 5.7
3.6
 2.7
 4.0
 6.3
 2.2
18 AT3G28460 methyltransferase 822476 At3g28460 3.7 2.6
 2.7
 1.7
 274.6
 2.5
 1.8
 2.3
 1.6
 1.5
 1.5
 1.5
 0.6
 1.0
 -0.2
19 AT4G24750 Rhodanese/Cell cycle control phosphatase superfamily protein 828577 At4g24750 3.6 0.6
 1.3
 -0.2
 246.0
 2.7
 1.2
 2.6
 1.2
 0.6
 0.5
 0.9
 0.4
 2.2
 2.3
20 AT3G63510 FMN-linked oxidoreductases superfamily protein 825526 At3g63510 3.5 4.0
 3.0
 3.8
 110.9
 2.1
 2.2
 2.7
 0.3
 2.6
 2.7
1.8
 4.5
1.0
 2.2
0.4
 0.7
 1.0
21 EGY2 ethylene-dependent gravitropism-deficient and yellow-green-like 2 830458 At5g05740 3.5 5.8
 6.2
 3.9
 221.5
 4.4
 1.5
 2.8
 1.6
 5.0
 1.0
0.6
 1.8
 0.2
 1.6
 2.2
22 OVA2 tRNA synthetase class I (I, L, M and V) family protein 834962 At5g49030 3.5 3.6
 4.0
 2.3
 65.3
 2.5
 2.4
 2.4
 2.0
 4.2
 2.6
 2.2
 0.7
 1.7
 0.8
23 ISPD Nucleotide-diphospho-sugar transferases superfamily protein 814779 At2g02500 3.5 2.9
 3.3
 1.8
 401.7
 2.6
 0.8
 2.3
 1.6
 3.7
 1.4
 1.1
 1.1
 2.8
 0.8
24 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily protein 822132 At3g25480 3.5 3.4
 3.7
 2.2
 218.8
 2.8
 2.1
 1.7
 2.2
 2.1
 2.0
1.7
 0.6
 1.3
 1.5
 0.5
25 AT4G19830 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 827727 At4g19830 3.5 2.2
 1.9
 1.9
 194.0
 1.6
 2.7
 1.4
 -0.1
 2.1
 2.7
 0.7
 -1.0
 1.0
 0.6
26 AT2G30320 Pseudouridine synthase family protein 817582 At2g30320 3.5 2.0
 1.4
 2.2
 1435.4
 1.7
 -0.0
 1.6
 -0.1
 -0.4
 1.5
1.2
 1.8
 0.3
-0.3
 1.3
 0.2
27 AT2G32500 Stress responsive alpha-beta barrel domain protein 817811 At2g32500 3.5 6.0
 5.9
 4.4
 11.7
 3.6
 2.8
 3.8
 2.0
 5.2
 2.6
2.5
 2.2
 0.1
 2.5
28 LSMT-L Rubisco methyltransferase family protein 837964 At1g14030 3.4 3.2
 2.9
 2.7
 296.6
 2.4
 0.9
 2.7
 1.6
 1.8
 0.8
0.8
 2.3
 0.2
 1.5
 1.9
29 SAMC1 S-adenosylmethionine carrier 1 830101 At4g39460 3.4 1.6
 2.3
 0.5
 324.6
 1.8
 1.3
 2.4
 1.2
 3.2
 2.3
2.1
 0.7
0.4
 0.6
0.4
 2.1
0.5
 1.5
0.3
30 AT3G06980 DEA(D/H)-box RNA helicase family protein 819883 At3g06980 3.4 2.0
 1.7
 1.7
 292.4
 2.1
 1.4
 1.9
 1.3
 0.7
 1.8
0.6
 1.7
 1.6
 1.7
 2.1
31 SKL2 shikimate kinase like 2 818115 At2g35500 3.4 2.9
 3.3
 1.7
 278.6
 2.6
 1.4
 1.8
 1.7
 1.7
 1.8
 2.2
 1.2
 2.1
 0.7
32 PDF1B peptide deformylase 1B 831318 At5g14660 3.4 3.8
 4.3
 2.3
 42.9
 2.7
 3.2
 2.9
 2.0
 3.7
 2.6
1.8
 1.2
 1.0
 0.9
 0.8
-0.7
33 HEMD uroporphyrinogen-III synthase family protein 817195 At2g26540 3.4 2.6
 2.5
 2.0
 552.7
 4.7
 0.5
 4.2
 1.4
 2.8
 0.4
 0.5
 0.5
 -0.5
 1.0
34 Pnsl5 cyclophilin 20-2 831151 At5g13120 3.4 1.7
 2.5
 0.5
 670.5
 1.9
 0.8
 1.5
 1.5
 1.2
 0.9
0.6
 0.4
0.2
 0.6
 1.1
 -0.1
35 AT5G66470 GTP-binding protein Era-like protein 836779 At5g66470 3.4 2.7
 3.0
 1.7
 159.2
 2.1
 2.2
 1.9
 1.9
 1.9
 1.1
0.4
 2.3
 0.3
 -0.9
 1.5
36 AT5G10620 methyltransferase 830927 At5g10620 3.4 1.2
 1.0
 1.0
 375.8
 2.4
 2.2
 0.4
 -0.1
 1.6
 1.0
0.3
 1.1
-0.4
 -0.4
37 AT5G22340 NF-kappa-B inhibitor-like protein 832294 At5g22340 3.4 3.5
 4.0
 2.1
 155.2
 3.0
 2.0
 2.4
 1.5
 2.4
 2.0
0.3
 2.3
 0.9
 2.3
 0.8
38 PGI1 phosphoglucose isomerase 1 828564 At4g24620 3.4 2.7
 2.6
 2.1
 273.5
 0.9
 2.3
 2.0
 0.4
 1.6
 1.4
-0.8
 -0.0
 0.0
 0.5
 2.2
-1.1
39 AT5G52970 thylakoid lumen 15.0 kDa protein 835375 At5g52970 3.3 3.2
 4.0
 1.6
 318.5
 2.8
 0.9
 2.1
 1.8
 3.0
 1.5
 0.1
 0.1
 2.9
 1.2
40 AT4G19985 Acyl-CoA N-acyltransferases (NAT) superfamily protein 827743 At4g19985 3.3 4.6
 4.1
 3.9
 137.7
 2.6
 2.6
 1.6
 2.1
 2.7
 1.9
 0.9
 0.2
 -0.5
 2.0
41 AT1G04420 NAD(P)-linked oxidoreductase superfamily protein 839524 At1g04420 3.3 3.9
 4.2
 2.5
 205.7
 3.3
 1.3
 2.5
 1.8
 4.4
 1.6
 1.0
 2.3
 3.3
 0.9
42 EMB2369 tRNA synthetase class I (I, L, M and V) family protein 825755 At4g04350 3.3 5.6
 5.6
 4.2
 55.9
 3.2
 2.6
 3.9
 2.1
 4.2
 3.5
 2.4
1.9
 1.2
 1.4
 2.4
43 LUT1 Cytochrome P450 superfamily protein 824479 At3g53130 3.3 5.6
 5.2
 4.6
 52.1
 3.8
 2.6
 2.0
 2.4
 3.9
 2.4
2.0
 1.5
 0.8
 3.0
 2.3
44 AT1G76450 Photosystem II reaction center PsbP family protein 843978 At1g76450 3.3 3.6
 4.7
 1.6
 129.5
 2.8
 2.1
 2.4
 2.5
 3.8
 2.4
0.3
 1.5
 1.0
 2.7
 0.7
45 AT4G18375 RNA-binding KH domain-containing protein 827566 At4g18375 3.3 1.0
 0.8
 0.8
 749.3
 0.5
 1.9
 -0.2
 -0.0
 1.0
 -1.0
 1.7
0.7
 -0.1
-0.9
 -1.0
 1.8
46 AT4G17360 Formyl transferase 827448 At4g17360 3.3 5.1
 4.9
 3.9
 54.0
 1.2
 2.2
 2.5
 1.1
 2.4
 2.6
0.3
 3.0
1.7
 1.0
-0.4
 2.1
1.5
 1.7
47 AT1G64150 Uncharacterized protein family (UPF0016) 842719 At1g64150 3.2 6.2
 6.2
 4.4
 63.1
 2.7
 2.2
 3.8
 1.3
 4.9
 2.2
 1.0
 0.7
 1.1
 2.1
48 NTRC NADPH-dependent thioredoxin reductase C 818766 At2g41680 3.2 3.8
 3.5
 3.0
 78.7
 2.4
 3.0
 2.7
 2.2
 3.1
 3.5
3.4
 1.2
 2.0
 2.7
-0.1
 1.1
49 AT1G74070 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 843747 At1g74070 3.2 3.5
 3.6
 2.5
 177.8
 2.6
 2.3
 1.5
 1.9
 0.4
 1.2
-0.4
 0.2
 1.0
 -0.5
 0.3
50 DEG2 DEGP protease 2 819406 At2g47940 3.2 2.5
 3.3
 1.0
 205.6
 2.0
 1.8
 2.4
 1.7
 2.8
 3.7
2.7
 3.0
2.9
 0.6
 4.5
0.6
 0.6
The preparation time of this page was 0.6 [sec].