Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT5G53800   nucleic acid-binding protein 
 ath-u.4   AT5G53800   nucleic acid-binding protein 
 ath-r.6   AT5G53800   nucleic acid-binding protein 
 ath-m.9   AT5G53800   nucleic acid-binding protein 
 ath-m.4.notissue   AT5G53800   nucleic acid-binding protein 
 ath-m.4.tis   AT5G53800   nucleic acid-binding protein 
 ath-m.4.str   AT5G53800   nucleic acid-binding protein 
 ath-m.4.hor   AT5G53800   nucleic acid-binding protein 
 ath-m.4.bio   AT5G53800   nucleic acid-binding protein 
 ath-e.1   AT5G53800   nucleic acid-binding protein 
 gma-u.4   100808770   vicilin-like seed storage protein At2g18540 
 gma-u.4   100778706   DEAD-box ATP-dependent RNA helicase 42 
 ppo-u.4   7460828   RNA-binding protein 25 
 mtr-u.4   25487355   DEAD-box ATP-dependent RNA helicase 42 
 sly-u.4   101248648   uncharacterized LOC101248648 
 osa-u.4   4336481   DEAD-box ATP-dependent RNA helicase 42 

close


Top 50 coexpressed genes to AT5G53800 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath3040   Spliceosome  2 180 4.05
 ath3013   Nucleocytoplasmic transport  2 103 -
 ath3018   RNA degradation  2 113 -
 ath3015   mRNA surveillance pathway  2 119 -
 ath4141   Protein processing in endoplasmic reticulum  2 215 -

close


ath:AT5G53800 (nucleic acid-binding protein) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-m.4.lig
for
AT5G53800
ath-u.4
for
AT5G53800
ath-r.6
for
AT5G53800
ath-m.9
for
AT5G53800
ath-m.4.notissue
for
AT5G53800
ath-m.4.tis
for
AT5G53800
ath-m.4.str
for
AT5G53800
ath-m.4.hor
for
AT5G53800
ath-m.4.bio
for
AT5G53800
ath-e.1
for
AT5G53800
gma-u.4
for
100808770
gma-u.4
for
100778706
ppo-u.4
for
7460828
mtr-u.4
for
25487355
sly-u.4
for
101248648
osa-u.4
for
4336481
1 CDPK19 calcium-dependent protein kinase 19 832065 At5g19450 5.4 4.2
 3.9
 3.4
 150.2
 1.4
 0.9
 3.8
 2.0
 3.8
 1.3
0.6
 1.5
1.3
 1.2
0.8
 0.1
-0.1
 1.6
1.4
 1.1
0.5
2 AT1G21160 eukaryotic translation initiation factor 2 (eIF-2) family protein 838712 At1g21160 5.1 4.9
 5.2
 3.2
 1022.8
 0.4
 0.5
 2.7
 2.5
 3.1
 6.7
5.9
 8.1
6.4
 5.7
 2.5
 8.3
6.4
 4.7
3 AT3G24490 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 822039 At3g24490 5.1 7.6
 7.4
 5.8
 47.2
 2.8
 1.9
 2.2
 1.6
 7.1
 2.7
2.4
 4.8
4.6
 5.1
3.4
 2.1
1.5
 6.5
2.2
 0.8
4 PFK4 phosphofructokinase 4 836279 At5g61580 4.9 0.0
 0.6
 -0.6
 3580.1
 -0.2
 0.4
 0.7
 1.5
 1.2
 0.8
0.3
 2.0
1.0
 0.3
0.0
 2.9
2.1
 1.3
0.9
 0.8
-0.1
5 AT5G08535 D111/G-patch domain-containing protein 830753 At5g08535 4.9 3.6
 2.9
 3.3
 198.9
 0.4
 3.4
 2.4
 2.2
 1.8
 1.4
 1.7
 -0.4
 1.4
 1.6
 3.4
6 AT2G02570 nucleic acid binding/RNA binding protein 814787 At2g02570 4.8 2.6
 1.7
 2.8
 371.8
 2.1
 1.4
 2.3
 1.6
 2.3
 1.7
1.2
 1.5
1.0
 1.2
 2.4
 0.7
 3.4
7 AT2G01220 Nucleotidylyl transferase superfamily protein 814650 At2g01220 4.8 3.3
 1.8
 3.9
 44.1
 4.3
 2.6
 3.2
 2.1
 -0.2
 0.7
 0.5
 -0.4
 0.3
 -1.0
 2.5
8 CCT1 phosphorylcholine cytidylyltransferase 817786 At2g32260 4.7 4.2
 3.3
 4.0
 34.1
 0.5
 2.7
 2.0
 2.5
 4.5
 3.6
2.0
 5.2
3.4
 3.4
2.1
 1.2
1.0
 2.0
 1.7
-0.5
9 MTM2 Myotubularin-like phosphatases II superfamily 830333 At5g04540 4.7 1.7
 1.1
 1.8
 504.5
 -0.0
 1.6
 1.6
 1.5
 3.0
 3.9
3.3
 2.2
2.1
 0.4
-1.1
 1.3
 -0.1
 1.0
10 AT4G02030 Vps51/Vps67 family (components of vesicular transport) protein 828155 At4g02030 4.7 1.5
 1.8
 0.9
 1255.5
 1.5
 0.8
 2.0
 1.0
 2.1
 1.1
0.3
 1.0
0.9
 -0.8
-1.1
 0.2
 0.5
0.2
 0.6
11 AT5G58100 uncharacterized protein 835922 At5g58100 4.7 0.8
 1.4
 -0.0
 6717.5
 1.1
 -0.4
 -0.1
 1.0
 1.2
 2.1
0.7
 3.3
1.0
 1.2
0.8
 0.4
 2.4
 0.9
12 AT1G26300 BSD domain-containing protein 839171 At1g26300 4.6 0.0
 1.2
 -1.2
 220.9
 1.2
 2.0
 2.3
 2.1
 1.9
 1.1
-0.3
 2.4
-0.2
 2.2
0.3
 -0.2
-0.3
 2.1
-0.4
 1.2
13 AT1G15200 protein-protein interaction regulator family protein 838086 At1g15200 4.5 8.8
 7.6
 7.6
 16.4
 2.7
 2.0
 3.3
 2.3
 7.9
 3.2
2.8
 2.7
1.0
 3.3
1.5
 3.1
 4.3
 2.7
14 AT3G30380 alpha/beta-Hydrolases superfamily protein 822739 At3g30380 4.5 3.3
 2.4
 3.3
 828.5
 -0.2
 0.4
 2.9
 1.2
 1.5
 1.4
1.3
 1.7
1.6
 1.9
0.9
 1.5
-0.0
 0.9
0.7
 1.6
1.3
15 AT4G32120 Galactosyltransferase family protein 829344 At4g32120 4.5 1.2
 1.3
 0.8
 2450.8
 0.2
 0.6
 1.1
 0.8
 2.6
 2.0
1.6
 1.4
1.2
 0.5
-0.6
 1.9
 3.0
 1.3
1.3
16 AT2G39300 CAP-gly domain linker 818515 At2g39300 4.4 2.8
 2.3
 2.6
 11638.0
 -0.1
 -0.5
 0.3
 1.5
 2.0
 -0.7
-0.8
 -0.4
-0.5
 0.2
-0.1
 0.2
 -0.1
 0.5
-0.1
17 AT5G15880 golgin family A protein 831445 At5g15880 4.4 4.0
 3.2
 3.8
 51.5
 0.2
 2.2
 1.0
 1.6
 3.7
 2.5
 2.3
 1.4
0.5
 1.0
0.1
18 AT2G02160 CCCH-type zinc finger family protein 814747 At2g02160 4.4 6.8
 6.6
 5.2
 210.9
 0.9
 1.4
 2.5
 2.7
 5.8
 2.1
1.8
 3.5
3.4
 2.4
1.4
 1.8
 2.5
1.9
 1.0
19 AT3G27610 Nucleotidylyl transferase superfamily protein 822383 At3g27610 4.4 1.4
 0.7
 1.7
 957.0
 1.8
 1.4
 2.3
 1.4
 0.2
 0.7
 0.5
 -0.4
 0.3
 -1.0
 2.5
20 AT1G32810 RING/FYVE/PHD zinc finger superfamily protein 840175 At1g32810 4.4 2.0
 3.5
 0.0
 416.7
 3.2
 1.5
 1.3
 2.7
 3.9
 1.2
0.8
 2.5
2.0
 3.1
1.8
 1.0
 2.0
 1.8
21 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein 844334 At1g79940 4.4 5.6
 5.3
 4.3
 670.5
 1.9
 1.2
 2.4
 3.6
 4.0
 2.1
 3.6
 3.7
3.3
 1.4
 0.8
 3.4
22 EML1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 820389 At3g12140 4.4 2.8
 2.2
 2.6
 160.4
 1.1
 1.3
 2.6
 2.0
 0.6
 1.7
1.7
 2.4
2.1
 2.6
1.3
 1.3
1.0
 1.7
0.2
 4.0
1.9
23 AT1G44810 DNA-binding storekeeper protein-related transcriptional regulator 841045 At1g44810 4.3 4.9
 3.5
 4.9
 44.0
 3.7
 1.6
 1.8
 3.8
 3.0
 2.2
2.0
 3.6
3.1
 7.5
5.2
 1.8
1.4
 5.2
24 HB-1 homeobox-1 839740 At1g28420 4.3 6.2
 5.0
 5.8
 137.2
 2.7
 1.6
 2.3
 2.0
 3.4
 2.8
2.5
 3.7
3.5
 2.7
2.3
 1.8
1.5
 3.3
0.6
 2.6
0.9
25 AT1G79950 RAD3-like DNA-binding helicase protein 844335 At1g79950 4.3 1.3
 1.1
 1.2
 353.9
 0.3
 1.2
 2.5
 1.8
 1.8
 0.2
 1.5
0.2
 1.5
 -0.9
26 AT1G29850 double-stranded DNA-binding family protein 839863 At1g29850 4.2 4.5
 3.1
 4.7
 72.0
 0.7
 1.5
 2.9
 2.8
 1.7
 1.2
0.2
 0.2
0.1
 0.2
 1.3
 0.6
 2.3
1.2
27 AT5G55100 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 835601 At5g55100 4.2 2.1
 1.3
 2.4
 383.1
 -0.8
 2.3
 2.8
 0.6
 3.6
 1.0
0.9
 1.1
0.6
 1.6
 1.4
 2.2
 1.2
28 AT3G13780 SMAD/FHA domain-containing protein 820588 At3g13780 4.2 7.7
 7.8
 5.6
 62.0
 1.3
 2.4
 2.8
 2.4
 5.4
 3.6
0.7
 1.5
0.5
 4.5
 1.5
 3.2
 2.0
29 ELF9 RNA binding (RRM/RBD/RNP motifs) family protein 831486 At5g16260 4.2 3.1
 2.7
 2.6
 45.6
 2.8
 2.5
 1.8
 0.9
 3.6
 2.1
1.9
 2.8
1.7
 2.2
0.7
 1.3
 3.3
 3.7
30 AT3G19515 apoptosis inhibitor 821486 At3g19515 4.2 1.8
 1.3
 1.8
 3116.0
 0.9
 -0.0
 1.7
 0.9
 -1.5





31 AT4G17010 transcription factor IIIB 827409 At4g17010 4.2 3.6
 3.7
 2.5
 496.2
 1.6
 1.7
 0.6
 1.8
 2.5
 3.8
0.5
 2.0
0.5
 3.6
 3.5
 2.3
2.0
 1.4
0.2
32 SOS2 Protein kinase superfamily protein 833502 At5g35410 4.1 2.3
 1.7
 2.2
 1342.4
 -0.8
 1.1
 2.1
 2.7
 1.7
 1.2
0.9
 1.1
-0.0
 0.4
-0.1
 2.4
 0.5
 1.1
33 ATMAP4K ALPHA1 Protein kinase superfamily protein 841750 At1g53165 4.1 2.4
 1.8
 2.4
 702.0
 0.0
 1.5
 0.7
 1.8
 2.7
 -0.6
-0.7
 -0.8
-1.1
 0.4
-1.1
 0.9
 1.5
 0.9
34 AT1G16810 7-dehydrocholesterol reductase-like protein 838252 At1g16810 4.0 5.8
 4.3
 5.7
 34.0
 3.4
 2.2
 3.5
 3.3
 4.4
 2.7
1.0
 1.6
1.2
 -0.0
-0.9
 3.2
1.6
 3.3
1.4
 1.9
35 AT1G63490 transcription factor jumonji (jmjC) domain-containing protein 842655 At1g63490 4.0 1.2
 1.0
 1.2
 422.0
 0.7
 1.4
 1.5
 2.1
 0.5
 2.1
1.6
 0.8
0.0
 0.7
 1.2
 2.1
 0.9
36 AT5G16210 HEAT repeat-containing protein 831480 At5g16210 4.0 1.6
 1.3
 1.5
 3727.9
 0.1
 0.9
 1.1
 -0.2
 2.2
 0.4
 0.0
 -0.3
 1.1
 0.9
 -0.3
37 CW14 CW14 protein (DUF1336) 842255 At1g59650 4.0 1.1
 0.5
 1.4
 4144.3
 -0.1
 0.8
 0.1
 1.7
 0.7
 -0.3
-1.0
 0.2
-0.7
 -1.4
-1.4
 0.0
 -0.0
-1.1
 -0.3
38 AT4G26630 DEK domain-containing chromatin associated protein 828770 At4g26630 4.0 8.0
 10.1
 3.8
 857.1
 1.8
 0.5
 4.0
 0.7
 8.4
 4.6
3.6
 5.1
5.0
 6.6
 2.2
 7.5
2.1
39 HUB1 histone mono-ubiquitination 1 819104 At2g44950 4.0 0.5
 1.6
 -0.8
 433.3
 2.6
 0.3
 2.0
 2.7
 1.9
 2.1
1.8
 2.9
1.4
 2.1
0.6
 1.0
 1.0
 2.4
40 AT4G16770 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 827383 At4g16770 4.0 0.9
 0.4
 1.0
 5037.5
 0.7
 -0.4
 1.8
 0.6
 0.2





41 AT5G24450 Transcription factor IIIC, subunit 5 832516 At5g24450 3.9 1.2
 0.8
 1.3
 1019.7
 2.1
 1.2
 1.6
 2.2
 0.6
 1.3
 0.3
 1.0
 1.6
 1.8
 1.5
42 AT1G80910 vacuolar fusion CCZ1-like protein (DUF1712) 844431 At1g80910 3.9 1.0
 0.3
 1.4
 10808.1
 0.2
 -0.7
 -0.3
 1.4
 0.7
 0.0
-0.2
 0.6
-1.0
 -0.7
 1.4
 1.1
 1.9
43 OS9 ER lectin-like protein 833459 At5g35080 3.9 1.5
 1.5
 1.0
 1953.0
 1.1
 1.9
 0.4
 1.1
 1.6
 0.2
-1.3
 2.1
0.9
 0.4
-1.0
 1.0
 2.0
 1.6
44 WIT1 WPP domain-interacting protein 1 831010 At5g11390 3.9 4.1
 3.0
 4.0
 124.0
 0.4
 1.8
 1.9
 3.0
 3.0
 1.1
0.7
 1.5
0.7
 2.0
0.5
 2.1
-1.3
 1.9
-0.3
 1.3
-0.1
45 DCP2 decapping 2 831201 At5g13570 3.9 1.6
 1.8
 1.1
 932.8
 1.4
 1.1
 2.1
 1.6
 2.6
 0.4
0.4
 0.1
0.0
 1.6
-0.3
 1.0
 -0.7
 1.5
46 AT3G15351 P53/DNA damage-regulated protein 820769 At3g15351 3.9 2.4
 1.4
 2.7
 296.7
 4.4
 1.4
 2.3
 1.0
 1.3
 1.4
 1.6
 2.0
1.3
 2.5
 -0.4
 1.2
47 AT1G66260 RNA-binding (RRM/RBD/RNP motifs) family protein 842943 At1g66260 3.9 2.8
 2.3
 2.6
 2259.7
 -0.9
 0.8
 2.1
 -0.1
 1.2
 3.2
2.6
 4.0
2.6
 2.4
1.0
 0.5
 3.3
3.0
 0.3
48 PRHA pathogenesis related homeodomain protein A 829117 At4g29940 3.9 8.7
 6.8
 8.1
 11.5
 3.3
 3.6
 2.4
 2.6
 5.9
 2.0
1.0
 1.5
1.3
 3.4
2.6
 1.1
 2.5
 3.4
49 AT3G62080 SNF7 family protein 825381 At3g62080 3.9 1.4
 1.3
 1.2
 1021.0
 1.3
 1.0
 2.0
 2.1
 1.8
 1.0
 0.9
 -0.6
 0.6
 1.8
 0.3
50 ATJ6 J-domain protein 6 830582 At5g06910 3.9 3.9
 3.6
 3.1
 366.8
 1.2
 1.0
 2.1
 2.5
 3.3
 1.5
1.3
 2.7
1.3
 1.5
1.1
 0.6
 0.6
 1.5
The preparation time of this page was 3.0 [sec].