Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   HDA6   histone deacetylase 6 
 ath-u.4   HDA6   histone deacetylase 6 
 ath-r.6   HDA6   histone deacetylase 6 
 ath-m.9   HDA6   histone deacetylase 6 
 ath-m.4.notissue   HDA6   histone deacetylase 6 
 ath-m.4.tis   HDA6   histone deacetylase 6 
 ath-m.4.str   HDA6   histone deacetylase 6 
 ath-m.4.hor   HDA6   histone deacetylase 6 
 ath-m.4.bio   HDA6   histone deacetylase 6 
 ath-e.1   HDA6   histone deacetylase 6 
 gma-u.4   HDA16   histone deacetylase 
 gma-u.4   HDA7   histone deacetylase 
 gma-u.4   HDA3   histone deacetylase 
 ppo-u.4   7453794   histone deacetylase 6 
 ppo-u.4   7456903   histone deacetylase 6 
 mtr-u.4   11414050   histone deacetylase 6 
 sly-u.4   101256864   histone deacetylase 6-like 
 sly-u.4   HDA3   histone deacetylase 
 osa-u.4   4345332   histone deacetylase 6 

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Top 50 coexpressed genes to HDA6 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath100   Steroid biosynthesis  3 36 -
 ath380   Tryptophan metabolism  2 64 -
 ath20   Citrate cycle (TCA cycle)  2 64 -
 ath3015   mRNA surveillance pathway  3 119 -
 ath10   Glycolysis / Gluconeogenesis  2 119 -

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ath:HDA6 (histone deacetylase 6) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-m.4.lig
for
HDA6
ath-u.4
for
HDA6
ath-r.6
for
HDA6
ath-m.9
for
HDA6
ath-m.4.notissue
for
HDA6
ath-m.4.tis
for
HDA6
ath-m.4.str
for
HDA6
ath-m.4.hor
for
HDA6
ath-m.4.bio
for
HDA6
ath-e.1
for
HDA6
gma-u.4
for
HDA16
gma-u.4
for
HDA7
gma-u.4
for
HDA3
ppo-u.4
for
7453794
ppo-u.4
for
7456903
mtr-u.4
for
11414050
sly-u.4
for
101256864
sly-u.4
for
HDA3
osa-u.4
for
4345332
1 IDH1 isocitrate dehydrogenase 1 829679 At4g35260 5.5 4.8
 4.2
 4.1
 282.3
 0.4
 1.5
 1.7
 1.6
 4.1
 3.4
3.1
 2.7
2.4
 2.2
1.1
 3.6
2.0
 1.3
0.5
 0.7
-1.2
 0.1
-1.0
 1.6
1.1
 1.8
1.3
2 TOPP4 type one serine/threonine protein phosphatase 4 818571 At2g39840 5.3 2.5
 1.7
 2.6
 371.3
 1.0
 1.8
 -0.5
 1.9
 3.0
 3.2
2.5
 2.4
1.8
 1.9
0.8
 1.2
0.5
 2.6
1.0
 6.5
2.1
 0.7
0.1
 2.6
2.0
 3.2
2.1
3 XF1 FAD/NAD(P)-binding oxidoreductase family protein 842213 At1g58440 5.0 0.0
 -0.1
 0.1
 14041.5
 0.2
 -0.8
 0.9
 -0.7
 0.0
 1.5
0.9
 1.1
1.0
 0.8
0.6
 1.7
0.3
 0.2
-1.0
 0.1
-1.1
 0.9
-0.8
 0.3
0.2
 0.0
-0.2
4 AT4G28370 RING/U-box superfamily protein 828953 At4g28370 4.9 1.4
 0.3
 2.0
 856.5
 0.4
 0.9
 0.4
 2.4
 2.2
 1.2
0.9
 1.0
-0.1
 -0.2
-1.4
 -0.6
-0.7
 0.5
0.2
 -0.1
 0.1
-1.3
 -0.6
-1.4
 0.7
5 AT5G38030 MATE efflux family protein 833782 At5g38030 4.4 0.1
 -0.2
 0.3
 7357.4
 0.2
 -0.4
 0.5
 -0.0
 0.4
 1.7
0.3
 0.4
-0.0
 2.6
1.2
 0.9
 -0.4
 0.1
-0.0
 0.3
-0.1
 1.3
-0.0
 0.1
6 AT3G24200 FAD/NAD(P)-binding oxidoreductase family protein 822006 At3g24200 4.4 2.9
 2.4
 2.6
 2535.7
 0.2
 1.0
 -0.7
 1.7
 1.4
 1.9
 0.6
 -0.9
 2.4
 3.4
 3.6
3.2
 0.3
 0.8
 1.1
7 AT2G31390 pfkB-like carbohydrate kinase family protein 817697 At2g31390 4.3 2.2
 2.3
 1.6
 2171.8
 0.7
 1.1
 1.4
 0.9
 2.2
 1.4
-0.0
 1.1
0.7
 1.1
0.1
 0.9
0.3
 0.9
-0.1
 1.0
1.0
 0.5
 -0.2
 0.7
8 ATMPK8 Protein kinase superfamily protein 838394 At1g18150 4.3 1.5
 1.5
 1.1
 3131.7
 -0.9
 -0.4
 0.7
 0.8
 0.0
 0.3
-0.1
 1.2
0.8
 1.9
0.2
 1.4
0.4
 1.1
-0.8
 0.1
-1.1
 0.7
0.2
 1.3
0.2
 0.7
0.2
9 EIF4A-III eukaryotic initiation factor 4A-III 821513 At3g19760 4.2 3.6
 3.8
 2.4
 1121.7
 2.0
 1.5
 0.7
 0.6
 1.9
 2.2
1.5
 2.4
2.3
 2.0
1.3
 1.5
1.0
 1.9
1.7
 4.0
 0.2
 2.4
 3.1
2.0
10 CLASP CLIP-associated protein 816539 At2g20190 4.1 1.1
 1.2
 0.7
 4456.4
 0.8
 -0.5
 1.0
 0.5
 0.6
 2.1
2.0
 1.4
1.0
 0.4
-0.2
 -0.0
 0.4
 1.7
1.6
 -0.4
-0.8
 0.8
-0.1
 -0.9
-1.5
11 OXP1 oxoprolinase 1 833761 At5g37830 4.1 1.9
 1.7
 1.7
 2235.9
 0.7
 0.5
 1.6
 1.6
 0.9
 2.0
 0.7
 1.6
 3.4
 2.0
 3.3
 -0.1
 0.4
 -0.8
12 FAB1A 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A 829460 At4g33240 4.1 0.2
 -0.3
 0.8
 7512.6
 -0.4
 0.2
 0.5
 0.8
 0.0
 2.0
0.5
 0.7
0.3
 0.4
-0.0
 -1.0
-2.4
 0.4
-0.1
 0.3
-1.0
 0.5
0.4
 0.5
-0.6
 0.3
0.1
13 Y14 RNA-binding (RRM/RBD/RNP motifs) family protein 841576 At1g51510 4.1 4.6
 4.5
 3.4
 1185.1
 2.5
 0.8
 2.2
 0.9
 1.5
 4.0
3.1
 2.9
2.3
 3.8
3.0
 0.8
-0.1
 1.3
0.4
 5.5
 -0.1
 2.4
 2.7
14 EULS3 hydroxyproline-rich glycoprotein family protein 818491 At2g39050 4.1 1.8
 1.4
 1.6
 15416.9
 -0.6
 -0.7
 -0.1
 0.4
 2.1
 1.2
-0.8
 1.8
0.2
 0.8
0.3
 0.8
 0.9
 -0.9
 -0.3
 1.5
 0.5
0.4
15 KNAT5 homeobox protein knotted-1-like 5 829335 At4g32040 4.1 2.8
 3.4
 1.5
 5966.1
 -0.3
 0.6
 -0.1
 2.4
 2.1








16 SKD1 AAA-type ATPase family protein 817306 At2g27600 4.0 2.9
 2.2
 2.9
 411.6
 -0.3
 1.4
 0.9
 2.5
 3.3
 5.5
3.2
 3.0
2.3
 0.6
0.1
 2.6
1.5
 2.4
1.6
 2.9
1.0
 0.4
-0.3
 1.2
-0.1
 1.0
17 AT5G51880 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 835263 At5g51880 4.0 2.0
 1.3
 2.2
 1527.4
 -0.3
 1.5
 -0.2
 0.5
 -0.8
 -0.6
 -1.0
 0.1
 1.0
 1.0
 0.3
 0.1
 1.0
 1.8
18 AT1G14300 ARM repeat superfamily protein 837991 At1g14300 3.9 0.5
 -0.3
 1.2
 1339.5
 1.5
 0.8
 0.6
 1.2
 -1.0
 0.9
0.9
 0.3
-0.1
 0.9
0.0
 1.4
-0.0
 1.7
-0.2
 2.0
 -0.4
 3.4
 1.8
19 ABCB2 P-glycoprotein 2 828702 At4g25960 3.9 1.2
 0.1
 2.1
 6747.8
 0.4
 0.0
 0.6
 -0.0
 -0.2
 -0.0
-0.1
 0.1
-0.5
 -0.6
-0.7
 0.3
-0.9
 -0.1
-0.3
 -0.6
-1.4
 -1.2
 -1.0
 -1.1
20 AT5G13030 selenoprotein O 831143 At5g13030 3.9 2.2
 1.0
 2.7
 1517.1
 -0.7
 0.7
 0.8
 1.2
 1.8
 2.2
 2.6
 -0.4
 2.3
 1.2
 0.6
 -0.0
-0.5
 2.9
0.5
 0.5
21 CYP710A2 cytochrome P450, family 710, subfamily A, polypeptide 2 818012 At2g34490 3.8 0.0
 -0.3
 0.3
 7777.6
 0.5
 -0.3
 -0.5
 0.7
 1.1
 -0.2
-0.2
 1.9
0.3
 0.7
-0.0

0.0
 -0.4
 -1.1
 0.8
-0.6
22 SIP1A small and basic intrinsic protein 1A 819564 At3g04090 3.8 2.5
 1.9
 2.5
 2066.8
 -0.5
 0.7
 0.6
 1.3
 3.9
 0.4
0.3
 1.0
0.6
 1.2
1.1
 2.0
0.7
 0.7
-0.3
 -0.1
-0.9
 -0.1
-0.4
 2.1
1.7
 1.7
23 RD2 Adenine nucleotide alpha hydrolases-like superfamily protein 816700 At2g21620 3.7 -0.1
 -0.3
 0.2
 6928.5
 0.1
 0.4
 -0.1
 0.8
 0.8
 1.6
 0.6
 -0.7
 -0.7
-1.3
 1.1
0.6
 -0.2
 0.3
 0.8
 -0.7
24 AT4G35320 uncharacterized protein 829686 At4g35320 3.6 -0.1
 -0.3
 0.1
 10639.1
 -1.3
 0.8
 0.6
 -0.9
 -1.2
 0.2
-0.7
 -0.1
-0.9
 -1.3
-1.9
 -0.9
-1.1
 -1.3
-1.7
 -2.2
 0.2
 -2.2
 -0.4
-1.8
25 AT2G46170 Reticulon family protein 819224 At2g46170 3.6 1.3
 0.3
 1.9
 1973.5
 -0.6
 0.7
 1.0
 0.1
 1.7
 1.2
1.1
 0.5
0.2
 -0.0
-0.3
 1.9
0.9
 1.5
0.1
 -0.0
-0.9
 1.0
-0.0
 3.8
3.3
 1.7
1.1
26 AT5G13400 Major facilitator superfamily protein 831181 At5g13400 3.6 0.8
 0.1
 1.3
 4788.7
 0.8
 1.0
 0.7
 -0.5
 0.8
 -0.2
 -0.3
 -1.7
 0.1
 -0.1
 -2.5
 0.4
 -0.3
 0.3
27 ABCC4 multidrug resistance-associated protein 4 819392 At2g47800 3.6 1.9
 1.3
 2.0
 1613.6
 0.3
 1.0
 1.0
 1.2
 1.9
 1.7
-0.2
 1.8
-0.4
 0.8
0.6
 0.8
-0.2
 0.1
-1.3
 1.3
-0.2
 0.0
-0.3
 2.4
-0.6
 0.0
28 KCR1 beta-ketoacyl reductase 1 843098 At1g67730 3.6 -0.1
 -0.3
 0.1
 3318.1
 1.4
 0.4
 0.7
 0.9
 0.4
 0.3
-0.2
 1.7
1.3
 -0.3
-1.1
 0.9
-0.4
 -0.6
-0.8
 -1.3
 0.6
-0.9
 0.2
-0.2
 1.8
0.5
29 UGT71B8 UDP-glucosyl transferase 71B8 821734 At3g21800 3.5

0.2
 14635.5
 -0.2
 0.2
 -0.7
 -0.7
1.2
0.6
 1.5
0.9
 2.1
1.7
 1.6
0.9
 1.6
1.3
 -0.4
-0.5
 1.9
0.5
 0.1
0.1
 -1.1
30 AT5G38020 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 833781 At5g38020 3.5 -0.6
 -0.6
 -0.5
 13167.5
 -0.1
 -0.3
 -0.8
 -1.4
 -1.0
 0.2
0.0
 -0.3
-0.3
 0.1
-0.2
 0.4
 -0.0
 0.9
0.7
 -0.4
-0.6
 0.6
0.4
 0.4
-0.6
31 SSL3 strictosidine synthase-like 3 837368 At1g08470 3.5 1.7
 1.6
 1.4
 3074.4
 0.8
 0.3
 2.4
 0.4
 0.1
 0.2
 0.5
 0.7
 2.7
 2.2
 -0.2
 0.9
0.0
 0.7
-0.6
 0.6
32 AT4G02860 Phenazine biosynthesis PhzC/PhzF protein 828159 At4g02860 3.5 1.3
 1.2
 1.1
 3852.0
 -0.2
 0.3
 0.4
 1.3
 -0.3
 0.4
-0.4
 1.0
-0.1
 1.5
1.4

-0.1
-0.4
 -0.6
 -0.2
 0.5
0.5
33 EDA4 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 819426 At2g48140 3.5 0.1
 0.2
 0.0
 7507.9
 0.1
 -0.3
 0.5
 -0.6
 -0.6


0.3
-0.3
 -0.2
-0.9
 -0.5
-0.5
 -0.7
 -1.1
 0.1
34 CYP83B1 cytochrome P450, family 83, subfamily B, polypeptide 1 829277 At4g31500 3.4 1.3
 0.4
 1.9
 4755.2
 -0.2
 0.1
 1.1
 0.9
 0.7
 1.6
1.5
 1.9
0.8
 0.6
0.5
 1.1
0.4
 1.4
0.5
 0.5
0.3
 0.2
-0.1
 0.0
-0.1
 -1.0
35 AT2G42520 P-loop containing nucleoside triphosphate hydrolases superfamily protein 818852 At2g42520 3.4 3.2
 1.9
 3.6
 1150.8
 0.1
 1.0
 1.8
 1.1
 3.1
 1.9
1.9
 2.2
1.1
 1.3
1.2
 1.7
1.7
 1.7
1.2
 0.6
-0.2
 0.3
-1.1
 1.3
1.3
 2.7
2.1
36 FBP7 F-box protein 7 838780 At1g21760 3.4 0.3
 0.2
 0.4
 10582.0
 -1.1
 -0.5
 -1.1
 1.3
 1.0
 1.7
1.0
 0.2
-0.2
 1.5
0.3
 0.1
-0.6
 1.1
1.0
 2.1
 -0.0
 2.7
 -2.0
37 AT3G22620 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 821833 At3g22620 3.4 0.1
 0.0
 0.2
 9561.2
 0.2
 0.3
 0.6
 -0.1
 -0.5


0.3
-0.3
 -0.2
-0.9
 -0.5
-0.5
 -0.7
 -1.1
 0.1
38 AT1G74460 GDSL-like Lipase/Acylhydrolase superfamily protein 843787 At1g74460 3.4 0.2
 -0.1
 0.4
 2723.7
 0.2
 0.7
 1.0
 -0.7
 0.1
 -0.8
 -0.4
 -0.3
 0.2
 0.2
 -0.6
-1.2
 -0.4
 -0.7
 0.2
39 AT3G07300 NagB/RpiA/CoA transferase-like superfamily protein 819918 At3g07300 3.4 2.0
 1.3
 2.3
 707.3
 1.8
 1.0
 1.9
 1.3
 2.2
 -0.3
 -1.5
 0.4
 -0.1
-1.0
 1.0
0.1
 2.9
 1.1
-1.5
 1.8
1.3
 2.3
40 AT3G27390 uncharacterized protein 822360 At3g27390 3.3 -0.5
 0.4
 -1.2
 5807.3
 -0.2
 -0.3
 -0.5
 1.2
 0.3
 0.7
0.2
 0.4
-0.7
 -0.8
-1.1
 -2.1
 -1.0
 1.4
-1.0
 -0.1
 -0.1
 -0.0
-0.7
41 AtRZ-1c RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein 830307 At5g04280 3.3 4.3
 4.1
 3.4
 64.3
 4.1
 3.6
 1.4
 1.8
 4.1
 1.4
0.5
 1.3
0.8
 2.3
0.8
 -1.0
-2.7
 -0.0
-0.4
 2.5
 0.5
-0.2
 2.4
2.1
 2.1
1.3
42 CAS1 cycloartenol synthase 1 815275 At2g07050 3.3 0.5
 0.2
 0.7
 8169.7
 0.5
 0.1
 0.2
 -0.8
 0.4
 0.7
-0.5
 1.2
-0.2
 0.9
-0.3
 2.0
1.4
 0.2
0.1
 -0.1
-0.2
 -0.0
-0.9
 -0.9
-1.9
 0.7
-0.1
43 AT4G28440 Nucleic acid-binding, OB-fold-like protein 828961 At4g28440 3.3 4.6
 4.5
 3.5
 378.4
 2.6
 1.5
 0.9
 1.8
 3.0
 2.4
2.1
 1.6
1.0
 1.4
0.9
 2.0
2.0
 1.4
0.1
 1.9
1.4
 0.1
-0.2
 1.9
1.8
 3.1
2.2
44 ALDH2C4 aldehyde dehydrogenase 2C4 822042 At3g24503 3.3 0.4
 0.1
 0.5
 4205.0
 -0.8
 0.2
 1.2
 1.0
 2.1
 2.0
0.7
 0.6
0.4
 1.0
0.8
 0.3
 -0.7
 -0.4
-0.4
 0.6
 -0.9
 -0.1
-0.3
45 ALDH2B4 aldehyde dehydrogenase 2B4 823955 At3g48000 3.3 -0.4
 -0.2
 -0.6
 16411.9
 -0.0
 -1.7
 0.1
 0.7
 0.1
 1.2
1.0
 1.2
0.6
 1.3
1.2
 2.6
-0.9
 1.4
0.6
 0.4
0.1
 1.2
0.6
 0.7
0.3
 1.4
-1.9
46 AT3G50350 membrane insertase, putative (DUF1685) 824197 At3g50350 3.3 0.4
 0.4
 0.2
 3439.2
 -1.5
 1.6
 0.5
 -0.0
 1.3
 3.4
2.2
 1.5
1.4
 0.8
0.6
 0.0
-1.0
 -0.5
-1.4
 2.9
 0.3
 2.3
 -0.3
47 PDH-E1 BETA pyruvate dehydrogenase E1 beta 839891 At1g30120 3.3 0.6
 0.6
 0.5
 7883.7
 0.6
 0.5
 0.7
 -0.9
 2.7
 1.6
1.6
 1.3
0.8
 1.0
0.4
 1.5
1.1
 -0.2
-1.6
 0.5
-0.6
 -0.5
-1.0
 1.9
1.3
 1.7
0.3
48 RAD52-1 cobalt ion binding protein 843472 At1g71310 3.3 2.6
 1.8
 2.7
 2248.5
 4.1
 0.2
 0.5
 1.0
 0.6
 -1.1
 -1.0
 1.4
 0.6
 0.6
 0.2
 1.0
 0.9
 2.3
49 TRM18 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein 6241019 At2g39435 3.3 -0.0
 -0.7
 0.7
-0.2
 -0.2
 1.4
 0.9
 -0.4
 -0.7
-1.0
 0.2
-0.6
 0.9
0.7
 0.9
-0.2
 0.5
-0.4
 0.1
 0.6
 2.3
 1.1
50 AT4G26490 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 828755 At4g26490 3.2

0.1
0.0
 0.0
 -1.2
 0.4





-0.6

0.2
The preparation time of this page was 2.2 [sec].