Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-m.5   11421966   phosphoglycerate kinase 3, cytosolic 
 mtr-u.4   11421966   phosphoglycerate kinase 3, cytosolic 
 mtr-r.4   11421966   phosphoglycerate kinase 3, cytosolic 
 mtr-u.4   11441786   phosphoglycerate kinase, cytosolic 
 mtr-u.4   11424739   phosphoglycerate kinase, cytosolic 
 gma-u.4   100802480   phosphoglycerate kinase, cytosolic 
 gma-u.4   100795933   phosphoglycerate kinase, cytosolic 
 gma-u.4   100796458   phosphoglycerate kinase 
 ppo-u.4   7492954   phosphoglycerate kinase, cytosolic 
 ppo-u.4   7481598   phosphoglycerate kinase, chloroplastic 
 ppo-u.4   7460679   phosphoglycerate kinase, cytosolic 
 ath-u.4   AT1G56190   Phosphoglycerate kinase family protein 
 ath-u.4   PGK   phosphoglycerate kinase 
 ath-u.4   PGK1   phosphoglycerate kinase 1 
 sly-u.4   101254111   phosphoglycerate kinase 
 sly-u.4   101253805   phosphoglycerate kinase, chloroplastic 
 osa-u.4   4341792   phosphoglycerate kinase, cytosolic 
 osa-u.4   4339204   phosphoglycerate kinase, chloroplastic 

close


Top 50 coexpressed genes to 11421966 (mtr-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 mtr3010   Ribosome  6 326 17.21
 mtr1200   Carbon metabolism  11 242 7.30
 mtr710   Carbon fixation in photosynthetic organisms  8 66 8.19
 mtr1230   Biosynthesis of amino acids  6 214 5.16
 mtr630   Glyoxylate and dicarboxylate metabolism  5 70 4.78

close


mtr:LOC11421966 (phosphoglycerate kinase 3, cytosolic) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-m.5
for
11421966
mtr-u.4
for
11421966
mtr-r.4
for
11421966
mtr-u.4
for
11441786
mtr-u.4
for
11424739
gma-u.4
for
100802480
gma-u.4
for
100795933
gma-u.4
for
100796458
ppo-u.4
for
7492954
ppo-u.4
for
7481598
ppo-u.4
for
7460679
ath-u.4
for
AT1G56190
ath-u.4
for
PGK
ath-u.4
for
PGK1
sly-u.4
for
101254111
sly-u.4
for
101253805
osa-u.4
for
4341792
osa-u.4
for
4339204
1 LOC11437303 aminomethyltransferase, mitochondrial 11437303 MTR_4g132360 6.8 8.8
 7.2
 -0.6
 1.1
 1.8
1.7
 3.7
3.5
 1.9
1.9
 1.0
0.1
 4.8
2.0
 2.9
0.2
 7.6
 2.5
 11.9
 2.2
 11.9
 -0.4
 7.5
2 LOC11429745 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 11429745 MTR_1g072260 6.6 6.3
 3.4
 -0.7
 0.1
 0.5
0.3
 6.1
4.1
 0.8
0.5
 -1.0
-2.1
 3.1
2.8
 -0.4
-1.5
 5.2
 0.4
 10.1
 -0.2
 4.5
 -1.0
 5.7
3 LOC11431390 photosystem I chlorophyll a/b-binding protein 5, chloroplastic 11431390 MTR_3g101670 6.5 5.0
 1.6
 0.2
 0.0
 -0.8
 1.9
 -0.1
 0.2
 1.9
 0.0
 1.4
 -0.3
 2.9
 -0.4
 2.5
 0.4
 3.8
4 LOC11427442 thioredoxin F-type, chloroplastic 11427442 MTR_7g080250 6.4 6.1
 3.4
 2.1
 2.3
 0.5
0.1
 1.4
0.7
 0.0
-0.1
 0.7
 1.5
 -0.2
 2.5
1.9
 1.0
-0.8
 5.7
3.5
 1.4
 3.4
 -1.3
 2.1
5 LOC11433227 50S ribosomal protein L11, chloroplastic 11433227 MTR_3g080800 6.3 6.9
 4.9
 0.0
 0.5
 0.4
 4.2
 0.4
 0.3
-0.8
 2.8
0.7
 0.7
-0.0
 1.9
 -0.2
 7.0
 -1.4
 5.6
 0.5
 2.6
6 LOC11437370 thylakoid lumenal 29 kDa protein, chloroplastic 11437370 MTR_5g064610 6.2 5.4
 2.6
 -0.6
 -0.8
 0.3
-0.2
 4.4
2.5
 -0.2
-0.8
 -0.9
 2.3
 -0.7
 1.7
 -0.8
 4.0
 -0.3
 3.1
 -0.6
 6.7
7 LOC11410196 30S ribosomal protein S1, chloroplastic 11410196 MTR_2g033020 6.1 7.7
 6.3
 1.0
 1.1
 1.8
1.1
 5.7
2.3
 2.0
1.3
 1.1
0.2
 3.0
2.9
 1.7
0.8
 3.7
 2.0
 9.8
 1.0
-0.4
 5.8
0.8
 1.1
 4.4
8 LOC11417893 30S ribosomal protein S31, chloroplastic 11417893 MTR_4g015540 6.0 6.8
 4.9
 -0.4
 -0.3
 0.2
-0.0
 3.9
2.3
 1.0
0.3
 0.0
 2.4
 0.0
 1.7
 -1.1
 5.1
 0.7
 5.4
 1.0
 2.4
9 LOC11423341 transketolase, chloroplastic 11423341 MTR_1g116120 5.9 7.1
 5.5
 1.4
0.5
 2.6
1.3
 3.5
1.5
 4.6
3.2
 3.4
1.3
 1.4
-0.4
 4.6
4.1
 3.7
3.0
 8.5
0.6
 3.7
2.5
 8.2
1.3
 4.3
0.3
 6.7
1.7
 4.5
-0.6
 7.5
-0.4
10 LOC11405458 serine hydroxymethyltransferase, mitochondrial 11405458 MTR_5g030950 5.9 5.9
 3.7
 2.0
-0.6
 2.4
-0.7
 2.9
1.2
 2.6
1.7
 3.6
1.2
 0.4
-1.2
 1.4
0.8
 1.1
-0.6
 2.6
0.7
 2.4
0.9
 9.0
0.1
 1.5
-0.4
 6.8
1.6
 0.0
 2.6
11 LOC11442149 ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic 11442149 MTR_5g080450 5.8 4.6
 1.6
 0.6
0.3
 0.6
0.6
 1.6
0.7
 3.5
2.8
 2.6
1.4
 0.7
-0.6
 4.2
3.8
 0.9
0.8
 2.4
 1.7
 5.9
 -0.8
-1.1
 6.9
2.8
 -0.2
 4.3
12 LOC11433472 protein CURVATURE THYLAKOID 1B, chloroplastic 11433472 MTR_7g118290 5.8 5.5
 3.1
 -1.0
-1.3
 -0.4
-1.0
 0.5
0.5
 5.0
3.3
 0.6
0.4
 0.1
-1.0
 2.0
1.9
 0.2
-0.7
 2.4
 0.2
 6.6
 -0.6
 7.4
 -0.6
-2.2
 4.4
2.5
13 LOC11428156 glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 11428156 MTR_3g115920 5.7 4.6
 1.6
 0.8
 1.2
 0.4
-0.0
 4.9
3.6
 0.2
-0.1
 0.4
-1.7
 2.5
1.4
 1.2
0.7
 3.9
 1.2
 9.9
 0.4
-0.5
 5.3
4.2
 0.3
 5.7
14 LOC11420246 2-Cys peroxiredoxin BAS1, chloroplastic 11420246 MTR_1g105090 5.7 8.7
 8.2
 2.0
1.7
 2.4
1.2
 -0.2
-0.4
 4.6
4.1
 1.4
1.1
 1.6
0.7
 6.1
2.6
 2.6
2.5
 5.5
4.8
 1.7
1.4
 10.6
7.2
 0.4
0.3
 12.3
3.3
 0.4
 4.8
15 LOC11405683 malate dehydrogenase 2, peroxisomal 11405683 MTR_4g092690 5.7 6.3
 4.5
 1.7
0.9
 2.0
0.5
 0.5
0.1
 4.6
4.2
 1.0
-0.2
 3.3
0.5
 4.1
0.7
 3.4
2.2
 2.2
2.0
 4.9
0.5
 5.7
-0.2
 2.0
-0.6
 5.3
0.2
 2.2
-0.6
 4.5
-0.6
16 LOC11439200 photosystem II stability/assembly factor HCF136, chloroplastic 11439200 MTR_4g075040 5.7 6.7
 5.0
 0.8
 1.1
 -0.3
-0.6
 4.3
4.2
 -0.7
-0.8
 -0.6
 1.0
 0.4
 2.9
 -0.3
 7.9
 -0.0
 7.6
 0.2
 5.3
17 LOC11433937 protein TSS 11433937 MTR_4g009960 5.6 6.1
 4.2
 -0.1
 -0.6
 -0.4
-0.7
 2.1
1.8
 0.7
-0.4
 -2.1
 1.4
 0.2
 0.5
 1.4
 0.6
 -1.5
 3.2
 0.3
 2.9
18 LOC11433745 fe-S cluster assembly factor HCF101, chloroplastic 11433745 MTR_6g086600 5.4 4.1
 1.2
 0.6
 -0.5
 -0.2
-0.3
 3.9
2.6
 0.1
-0.3
 -0.6
 2.7
 -0.4
 2.4
 0.8
 7.4
 -1.3
 5.8
 -0.7
 2.7
19 LOC11421100 glutamyl-tRNA reductase 1, chloroplastic 11421100 MTR_5g067410 5.4 5.0
 2.6
 1.0
-0.5
 0.9
0.8
 1.7
1.6
 4.3
2.1
 1.3
1.1
 0.7
-0.3
 5.6
0.2
 3.5
0.5
 -0.0
-0.0
 0.1
-0.7
 0.3
0.3
 0.4
-0.3
 3.3
-0.3
 -1.2
 3.6
20 LOC11441719 peroxiredoxin Q, chloroplastic 11441719 MTR_4g124790 5.4 6.0
 4.3
 -0.6
 -0.2
 0.6
-0.1
 6.1
4.3
 1.0
0.3
 0.7
-1.6
 4.6
0.7
 -1.1
-1.2
 4.1
 1.0
 8.5
 -0.7
 5.9
 0.6
 4.4
21 LOC11408737 ferredoxin, leaf L-A 11408737 MTR_8g088720 5.3 4.4
 1.8
 0.8
0.4
 0.4
0.1
 0.9
0.8
 4.6
3.3
 0.8
0.7
 1.8
0.8
 3.3
2.4
 2.0
1.7
 3.3
0.7
 4.8
1.0
 4.2
3.0
 0.3
-0.9
 6.7
3.5
 0.1
 5.6
22 LOC11424678 transketolase, chloroplastic 11424678 5.3
















23 LOC11421544 NAD(P)H-quinone oxidoreductase subunit U, chloroplastic 11421544 MTR_3g104980 5.3 4.8
 2.4
 -0.8
 -0.0
 0.5
0.0
 2.1
1.9
 -0.0
-0.1
 -1.2
 3.2
 -0.0
 2.2
 -0.4
 4.5
 -2.2
 4.0
 -0.7
 4.8
24 LOC11407117 50S ribosomal protein L24, chloroplastic 11407117 MTR_2g082410 5.3 5.4
 3.4
 0.0
 -0.7
 1.0
0.4
 4.0
2.3
 1.0
-0.0
 0.4
 2.1
 0.0
 2.0
 -1.0
 6.9
 -1.5
 3.7
 0.6
 2.7
25 LOC11441156 calcium sensing receptor, chloroplastic 11441156 5.3 4.9
 2.7
 0.1
-0.9
 0.3
0.3
 1.0
0.6
 3.9
3.2
 2.4
1.7
 -0.8
 2.3
 0.2
 0.4
 0.3
 2.8
 -1.2
 6.2
 -0.0
 4.5
26 LOC11444979 50S ribosomal protein L18, chloroplastic 11444979 MTR_2g044920 5.2 6.3
 4.8
 0.1
 0.4
 0.4
 3.0
 0.5
 1.6
1.3
 2.4
1.8
 2.1
1.7
 2.1
 0.8
 5.3
 -1.0
 3.8
 0.4
 2.8
27 LOC11437530 glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 11437530 MTR_7g084800 5.2 4.9
 2.6
 0.0
 0.1
 1.4
1.0
 6.4
4.0
 1.2
0.9
 1.1
 3.2
 0.9
 2.0
1.7
 1.1
1.0
 5.6
5.5
 1.3
0.3
 7.1
5.4
 -0.6
 6.3
28 LOC11416731 probable lactoylglutathione lyase, chloroplastic 11416731 MTR_8g102980 5.1 5.0
 2.8
 2.6
2.0
 2.4
2.2
 3.5
3.0
 2.8
2.4
 4.8
3.3
 1.3
0.1
 2.0
1.6
 0.2
0.1
 3.2
2.0
 2.7
-0.2
 4.0
1.5
 3.2
1.0
 4.2
3.3
 4.0
0.3
 6.0
0.2
29 LOC11420491 photosynthetic NDH subunit of subcomplex B 1, chloroplastic 11420491 MTR_4g007080 5.1 5.1
 3.1
 0.3
 1.3
 -0.8
-1.2
 2.3
2.2
 0.4
-0.4
 -0.7
 1.1
 -0.6
 3.0
 0.2
 5.2
 -1.1
 5.1
 0.2
 2.1
30 LOC11431219 uncharacterized LOC11431219 11431219 MTR_3g098520 5.1 5.0
 3.0
 -0.0
 0.7
 -0.1
-0.2
 3.2
2.1
 0.3
-0.5
 -0.8
 2.2
 -0.5
 0.7
 -0.9
 2.3
 -2.0
 3.5
 -0.7
 3.2
31 LOC11407939 ATP synthase delta chain, chloroplastic 11407939 MTR_4g103330 5.1 6.4
 5.2
 -0.2
 -0.4
 0.5
0.0
 5.4
3.8
 0.4
-0.2
 0.5
-0.7
 6.6
1.0
 0.7
-0.3
 2.7
 1.4
 6.4
 -0.4
 4.5
 -1.0
 4.6
32 LOC11418675 50S ribosomal protein L35, chloroplastic 11418675 MTR_4g130300 5.0 5.8
 4.3
 -0.6
 0.4
 -0.4
-0.4
 4.1
2.7
 0.8
-0.3
 0.7
 2.6
 0.7
 2.1
 0.3
 6.3
 -1.2
 6.4
 -0.6
 3.5
33 LOC11440200 fructose-bisphosphate aldolase 1, chloroplastic 11440200 MTR_4g071880 5.0 5.2
 3.4
 2.2
0.7
 4.2
1.3
 3.2
2.3
 5.6
4.3
 3.7
3.4
 5.0
4.8
 1.9
1.6
 5.0
4.5
 4.0
3.1
 5.5
1.8
 6.9
5.8
 6.1
0.5
 5.2
4.6
 2.1
0.3
 2.3
0.6
34 LOC11431735 ammonium transporter 1 member 2 11431735 MTR_1g079760 5.0 4.3
 1.9
 0.5
-0.1
 0.8
0.0


-0.0
-0.8
 1.4
0.1
 0.7
0.5
 1.2
0.6
 0.7
0.0
 1.0
0.1
 -0.4
-0.8
 2.8
0.4
 1.4
0.8
 0.5
0.4
35 LOC11429739 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic 11429739 MTR_1g071110 5.0 5.8
 4.3
 1.3
-0.4
 2.3
-1.1
 2.8
1.2
 5.4
4.9
 4.2
2.1
 1.8
1.0
 3.5
2.8
 3.1
1.8
 5.6
 2.2
 11.6
 1.1
0.1
 6.9
1.3
 -1.1
 1.0
36 LOC11416751 protein MET1, chloroplastic 11416751 MTR_8g088420 5.0 4.9
 2.9
 0.1
 0.3
 -0.3
-0.4
 3.3
2.6
 -0.3
-0.4
 -0.3
 3.5
 0.2
 2.6
 1.1
 6.7
 -0.4
 6.5
 -1.3
 4.2
37 LOC11409437 glutamate--glyoxylate aminotransferase 2 11409437 MTR_5g033230 5.0 5.4
 3.6
 0.2
 1.6
 0.4
-0.2
 4.6
2.1
 1.8
0.8
 0.7
-1.6
 4.0
3.2
 1.0
-0.7
 3.8
1.7
 0.7
0.6
 4.5
3.3
 0.3
-0.0
 5.9
0.6
 -1.7
 3.4
38 LOC11418744 ferredoxin--NADP reductase, leaf isozyme, chloroplastic 11418744 MTR_5g022300 5.0 4.3
 1.9
 -0.7
 -1.1
 0.5
0.0
 3.9
3.3
 -0.6
-0.8
 -0.5
-0.6
 2.3
1.4
 0.4
-0.0
 5.4
0.9
 0.7
-0.4
 9.5
5.9
 0.2
-1.7
 9.7
1.5
 -0.4
-0.8
 4.8
4.7
39 LOC11421607 dicarboxylate transporter 2.1, chloroplastic 11421607 MTR_2g009220 5.0 5.7
 4.2
 0.8
 3.0
 1.5
0.9
 3.5
2.5
 3.1
2.2
 -0.1
-2.0
 2.2
1.2
 0.5
-0.2
 7.1
2.4
 2.0
-0.9
 4.8
1.6
 1.7
0.3
 5.8
0.0
 0.7
-0.6
 2.7
2.2
40 LOC11445395 fructose-bisphosphate aldolase 1, chloroplastic 11445395 MTR_4g071860 4.9 5.2
 3.6
 2.2
0.7
 4.2
1.3
 3.2
2.3
 5.6
4.3
 3.7
3.4
 5.0
4.8
 1.9
1.6
 5.0
4.5
 4.0
3.1
 5.5
1.8
 6.9
5.8
 6.1
0.5
 5.2
4.6
 2.1
0.3
 2.3
0.6
41 LOC11440749 30S ribosomal protein 2, chloroplastic 11440749 MTR_3g027140 4.9 4.4
 2.3
 0.2
 -0.6
 0.3
-0.9
 3.5
2.5
 -0.2
-0.5
 -1.3
 3.2
 0.2
 1.1
 0.3
 5.3

1.1
 2.0
42 LOC11429907 photosynthetic NDH subunit of subcomplex B 3, chloroplastic 11429907 MTR_2g101380 4.8 4.3
 2.0
 -0.3
 0.4
 -0.3
-1.3
 1.1
1.1
 -0.5
-1.0
 -0.1
 1.6
 -0.7
 2.9
 0.2
 3.2
 -1.6
 1.5
 -1.3
 0.5
43 LOC11412587 30S ribosomal protein S9, chloroplastic 11412587 MTR_1g021760 4.8 6.3
 5.2
 -0.4
 0.1
 0.2
-0.2
 5.6
4.9
 0.7
-0.6
 0.5
-0.9
 3.3
3.0
 1.8
0.2
 1.8
 -0.9
 5.6
 -0.0
 5.1
 -0.1
 3.3
44 LOC11407960 glyceraldehyde-3-phosphate dehydrogenase, cytosolic 11407960 MTR_4g103920 4.8 5.3
 3.8
 6.9
5.9
 11.1
7.5
 7.4
6.3
 2.4
2.3
 11.0
7.9
 7.0
5.2
 1.3
1.0
 7.2
5.4
 3.0
1.2
 13.4
6.0
 1.6
1.1
 7.4
3.6
 2.4
1.2
 5.5
4.5
 1.0
0.6
45 LOC11438242 glutathione S-transferase L3 11438242 MTR_1g116270 4.8 3.7
 1.2














46 LOC11409952 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 11409952 MTR_5g026840 4.7 5.2
 3.7
 1.1
 1.2
 0.5
0.2
 2.0
1.6
 0.4
0.3
 2.1
 2.7
 2.4
 3.6
 1.8
 5.3
 0.2
 2.6
 0.3
 1.0
47 LOC11412641 elongation factor Tu, chloroplastic 11412641 MTR_3g076660 4.6 7.4
 7.3
 -0.8
 0.2
 1.4
-1.2
 7.3
5.4
 2.2
-0.5
 0.5
0.2
 6.5
6.4
 2.1
0.7


0.1
-0.3
 6.9
6.6
 0.5
 6.5
48 LOC11406827 magnesium-dependent phosphatase 1 11406827 MTR_4g093560 4.6 3.7
 1.4
 1.8
-0.2
 -0.1
-0.5
 0.7
-0.7
 0.9
0.4
 -0.7
-1.6
 1.0
 0.5
 0.5
 -0.8
 0.4
 -0.8
 -0.1
 -1.6
 -0.7
-1.1
 0.7
0.0
49 LOC11407878 ribose-phosphate pyrophosphokinase 4 11407878 MTR_5g033300 4.6 4.7
 3.0
 2.7
1.8
 3.4
3.3
 0.6
-0.0
 1.1
0.9
 1.7
0.9
 2.1
1.4
 1.5
-0.3
 2.3
0.3
 2.0
1.2
 3.0
0.9
 1.4
1.0
 1.8
0.9
 0.3
-0.3
 1.0
-0.4
 0.3
-0.4
50 LOC11433975 glycine cleavage system H protein, mitochondrial 11433975 MTR_5g014260 4.6 4.3
 2.4
 -0.5
 0.3
 -0.1
-0.1
 3.4
3.2
 -0.3
-0.4
 0.0
-0.1
 1.8
1.1
 0.4
0.2
 3.2
2.5
 0.5
0.2
 7.6
7.3
 -0.1
-0.5
 6.9
3.4
 -0.8
 5.9
The preparation time of this page was 1.6 [sec].