Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   AT3G13480   nuclear polyadenylated RNA-binding protein 
 ath-r.6   AT3G13480   nuclear polyadenylated RNA-binding protein 
 ath-m.9   AT3G13480   nuclear polyadenylated RNA-binding protein 
 ath-m.4.notissue   AT3G13480   nuclear polyadenylated RNA-binding protein 
 ath-m.4.tis   AT3G13480   nuclear polyadenylated RNA-binding protein 
 ath-m.4.str   AT3G13480   nuclear polyadenylated RNA-binding protein 
 ath-m.4.hor   AT3G13480   nuclear polyadenylated RNA-binding protein 
 ath-m.4.bio   AT3G13480   nuclear polyadenylated RNA-binding protein 
 ath-m.4.lig   AT3G13480   nuclear polyadenylated RNA-binding protein 
 ath-e.1   AT3G13480   nuclear polyadenylated RNA-binding protein 
 ath-u.4   AT1G55475   uncharacterized protein 
 ppo-u.4   7483232   uncharacterized LOC7483232 
 ppo-u.4   7461349   uncharacterized LOC7461349 
 sly-u.4   101252018   uncharacterized LOC101252018 
 osa-u.4   107278554   uncharacterized LOC107278554 
 osa-u.4   4334411   uncharacterized LOC4334411 

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Top 50 coexpressed genes to AT3G13480 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath650   Butanoate metabolism  1 20 -
 ath280   Valine, leucine and isoleucine degradation  1 52 -

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ath:AT3G13480 (nuclear polyadenylated RNA-binding protein) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
AT3G13480
ath-r.6
for
AT3G13480
ath-m.9
for
AT3G13480
ath-m.4.notissue
for
AT3G13480
ath-m.4.tis
for
AT3G13480
ath-m.4.str
for
AT3G13480
ath-m.4.hor
for
AT3G13480
ath-m.4.bio
for
AT3G13480
ath-m.4.lig
for
AT3G13480
ath-e.1
for
AT3G13480
ath-u.4
for
AT1G55475
ppo-u.4
for
7483232
ppo-u.4
for
7461349
sly-u.4
for
101252018
osa-u.4
for
107278554
osa-u.4
for
4334411
1 AT5G28150 hypothetical protein (DUF868) 832890 At5g28150 5.2 4.5
 4.5
 346.6
 0.8
 1.6
 1.4
 1.3
 2.5
 4.2
 2.0
1.2
 2.1
1.5
 1.8
1.5
 2.8
2.7
 0.9
 2.7
2 AT1G78200 Protein phosphatase 2C family protein 844156 At1g78200 5.1 5.2
 3.5
 38.5
 1.8
 1.7
 2.5
 1.9
 3.5
 3.9
 1.9




3 AT3G04310 uncharacterized protein 819586 At3g04310 4.9 5.4
 3.1
 95.4
 1.6
 1.8
 1.1
 2.4
 1.5
 5.2
 2.3
0.4
 0.4
-0.5
 0.4
-0.1
 0.8
-0.6
 0.9
 1.8
4 AT2G18240 Rer1 family protein 816339 At2g18240 4.9 4.8
 3.6
 422.2
 0.9
 1.1
 1.1
 1.6
 2.0
 5.0
 3.9




5 AT3G29760 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 822663 At3g29760 4.8 4.7
 3.6
 2536.1
 0.8
 0.6
 -0.1
 2.9
 0.9
 3.9
 1.4
0.4
 0.4
-0.3
 1.7
0.9
 0.4
0.3
 0.5
-0.8
 1.0
0.9
6 AT3G56840 FAD-dependent oxidoreductase family protein 824851 At3g56840 4.7 3.7
 4.4
 18.0
 1.4
 2.3
 1.9
 2.3
 2.9
 1.6
 2.6
 -0.6
 0.8
 1.3
 0.4
 0.5
7 TPR4 Tetratricopeptide repeat (TPR)-like superfamily protein 839500 At1g04530 4.7 4.2
 3.8
 375.4
 3.6
 0.7
 0.5
 2.2
 1.2
 2.1
 0.8

1.4

8 AT5G26720 ubiquitin carboxyl-terminal hydrolase-like protein 832717 At5g26720 4.5 5.2
 2.6
 7257.4
 0.4
 0.2
 0.1
 0.9
 0.9
 2.8
 3.2

0.6

9 AT5G25360 uncharacterized protein 832608 At5g25360 4.4 4.6
 3.1
 1080.2
 0.5
 2.8
 -0.7
 0.0
 0.8
 1.7
 1.7
1.5
 -0.2
-0.4
 1.9
1.4
 2.1
1.7
 0.9
 1.0
10 AT1G77930 Chaperone DnaJ-domain superfamily protein 844128 At1g77930 4.3 4.2
 3.2
 94.4
 1.6
 1.6
 1.3
 2.4
 2.3
 2.2
 1.1
 -1.2
 -0.1
 0.2
 -0.5
 1.9
11 PDV1 plastid division1 835409 At5g53280 4.3 3.9
 3.5
 308.4
 -0.1
 3.0
 -0.3
 1.9
 -0.4
 2.3
 1.7
 1.9
0.6
 1.2
0.5
 1.3
1.1
 1.3
-0.1
 0.2
-0.1
12 PPX2 protein phosphatase X 2 835619 At5g55260 4.2 3.2
 4.1
 1175.2
 1.0
 1.7
 1.3
 1.0
 1.2
 -0.6
 2.1
0.2
 0.3
-0.4
 -0.0
-0.6
 0.2
 1.0
 -0.1
13 AT4G19670 RING/U-box superfamily protein 827711 At4g19670 4.1 4.3
 2.9
 1845.8
 1.3
 1.4
 0.8
 0.4
 0.0
 3.0
 2.5
 0.4
-0.0
 -0.2
-1.0
 -0.4
 0.9
 1.5
14 NAM NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 841721 At1g52880 4.1 4.4
 2.8
 275.1
 0.7
 3.1
 1.5
 1.4
 1.2
 -0.2
 0.7
0.7
 -0.6
-0.7
 0.8
-0.3
 0.9
0.5
 -0.4
-0.4
 1.0
0.2
15 AT1G63170 Zinc finger, C3HC4 type (RING finger) family protein 842621 At1g63170 4.1 3.7
 3.3
 5132.7
 -1.0
 0.7
 0.4
 1.3
 0.8
 2.2
 1.4
1.3
 0.0
-0.1
 0.9
-0.1
 0.4
-0.5
 1.1
0.9
 0.7
0.1
16 AT5G49610 F-box family protein 835023 At5g49610 4.0 3.8
 3.2
 34.7
 -0.3
 2.1
 3.5
 2.4
 2.9
 3.6
 4.3
 0.7
 0.7
 -0.2

17 AT5G65480 uncharacterized protein 836673 At5g65480 4.0 4.1
 2.8
 3106.8
 1.1
 0.1
 3.1
 2.0
 -0.7
 3.1
 2.2
1.3
 -0.1
 1.8
 0.5
0.4
 0.4
0.1
 2.0
0.4
18 AT2G17340 pantothenate kinase 816241 At2g17340 4.0 3.9
 3.0
 952.9
 1.6
 1.7
 0.8
 2.1
 2.0
 2.3
 1.0
0.6
 0.7
0.1
 0.6
-1.1
 -0.1
 0.1
 -0.3
19 AT5G08430 SWIB/MDM2 and Plus-3 and GYF domain-containing protein 830742 At5g08430 4.0 3.6
 3.2
 411.9
 0.0
 1.8
 1.7
 0.8
 0.6
 1.5
 1.9
-0.2
 0.5
0.3
 0.2
-0.1
 0.7
0.5
 0.2
 -1.4
20 AT4G29120 6-phosphogluconate dehydrogenase family protein 829033 At4g29120 3.9 3.4
 3.5
 140.6
 2.3
 2.4
 2.6
 3.1
 0.4
 1.8
 1.3
 -0.4
 -1.7
 -1.0
 -0.2
 0.5
21 MUB6 membrane-anchored ubiquitin-fold protein 6 precursor 838810 At1g22050 3.9 3.2
 3.6
 729.5
 1.4
 2.2
 0.1
 0.7
 0.9
 0.2
 5.1

0.3
 0.6
 0.5
22 AT2G17350 beta-mannosyltransferase-like protein 816242 At2g17350 3.9 4.6
 2.2
 1254.0
 2.3
 1.6
 1.9
 0.7
 1.4
 2.6
 1.9
 -0.4
 -0.0
 1.6
 -0.0
-0.1
 0.6
-1.1
23 AT4G32600 C3H4 type zinc finger protein 829395 At4g32600 3.9 4.3
 2.5
 278.3
 -0.6
 1.4
 0.9
 2.2
 1.3
 4.0
 2.5
1.5
 -0.4
-0.6
 0.2
0.1
 -1.0
-1.1
 1.4
-0.1
 0.5
0.1
24 AT3G21390 Mitochondrial substrate carrier family protein 821693 At3g21390 3.9 3.5
 3.3
 85.0
 1.4
 2.3
 1.1
 2.0
 1.5
 0.5
 1.3
0.0
 0.2
-1.6
 -0.7
-1.2
 0.9
-0.4
 0.9
 -1.0
25 AT3G05345 Chaperone DnaJ-domain superfamily protein 7922548 At3g05345 3.9 4.1






2.9
 1.7

1.3
 0.2
 -0.3
26 AT2G46100 Nuclear transport factor 2 (NTF2) family protein 819218 At2g46100 3.8 4.2






0.2
 0.2
 0.2
 -1.9
 -1.0

27 AT1G31300 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein 840018 At1g31300 3.8 3.4
 3.2
 620.9
 1.0
 1.2
 1.1
 1.7
 -0.2
 1.9
 2.5
1.2
 0.8
0.2
 1.2
1.0
 1.1
0.8
 0.3
0.0
 1.5
1.2
28 PS2 Presenilin-2 817540 At2g29900 3.8 3.6
 3.0
 585.5
 0.3
 1.1
 1.1
 2.2
 1.3
 1.2
 2.0
 -0.2
 -0.3
 1.1

29 CIPK7 CBL-interacting protein kinase 7 821874 At3g23000 3.8 2.9
 3.6
 712.0
 2.7
 0.6
 2.9
 1.6
 0.4
 3.1
 0.8
0.2
 0.8
-0.4
 -0.5
-1.0
 0.4
-0.5
 0.2
-0.2
 1.6
-0.0
30 AT5G60570 Galactose oxidase/kelch repeat superfamily protein 836178 At5g60570 3.7 3.8
 2.7
 3087.9
 0.5
 1.7
 0.5
 0.5
 -0.1
 3.3
 1.8
 0.7
0.5
 1.4
0.7
0.4
 1.0
31 AT2G39170 MEF2BNB-like protein 818502 At2g39170 3.7 3.3
 3.1
 268.5
 0.1
 2.8
 0.7
 0.2
 1.8
 3.2
 1.1
 0.4
-0.2
 0.9
-0.4
 0.7
 0.8
 1.8
32 AT1G62250 orotidine 5'-phosphate decarboxylase 842522 At1g62250 3.7 3.2
 3.2
 447.2
 1.0
 1.8
 0.5
 1.9
 0.6
 2.0
 1.4
 0.4
 0.1
 -0.3
 0.0
 2.8
33 AT1G26650 Son of sevenless protein 839205 At1g26650 3.7 2.3
 4.1
 401.1
 0.6
 0.8
 0.9
 4.2
 0.8
 2.5
 1.8
 1.2
0.4
 -0.2
-0.3
 1.4
 -0.5
 0.7
34 ZIP11 zinc transporter 11 precursor 842041 At1g55910 3.7 3.6
 2.8
 597.0
 1.5
 2.3
 -0.9
 0.9
 1.8
 1.8
 1.2
-0.5
 -0.6
-0.6
 -0.3
-1.0
 0.9
0.6
 -0.2
-0.5
 1.2
0.8
35 AT2G01260 hypothetical protein (DUF789) 814653 At2g01260 3.7 4.0
 2.4
 763.4
 -1.0
 1.9
 0.3
 3.5
 -0.2
 0.6
 2.2
1.3
 1.0
0.7
 0.7
0.6
 -1.0
-1.5
 1.3
0.4
 2.8
0.3
36 BLH3 BEL1-like homeodomain 3 843877 At1g75410 3.7 3.3
 3.1
 2584.7
 1.2
 0.9
 0.7
 1.0
 1.1
 1.2
 1.6
0.5
 0.5
0.4
 -0.4
-0.9
 0.7
-0.4
 -0.1
-0.3
 1.8
0.9
37 AT2G44310 Calcium-binding EF-hand family protein 819039 At2g44310 3.7 3.2
 3.2
 3896.9
 1.5
 -0.1
 0.9
 1.0
 0.9
 1.7
 0.2
 1.2
0.5
 0.4
-0.4
 -0.1
-0.9
 1.0
-0.1
 -0.0
-0.1
38 AT2G25190 PPPDE putative thiol peptidase family protein 817057 At2g25190 3.6 2.8
 3.5
 5356.4
 1.5
 0.7
 -0.2
 -0.1
 0.7
 2.5
 3.4
1.6
 1.0
0.8
 0.6
0.4


39 AT4G27840 SNARE-like superfamily protein 828897 At4g27840 3.6 3.5
 2.8
 841.2
 -1.4
 1.3
 1.8
 3.3
 0.2
 1.7
 1.9
1.2
 1.0
0.4
 0.6
-0.1
 0.3

40 AT4G12990 uncharacterized protein 826912 At4g12990 3.6 1.9
 4.4
 291.5
 0.7
 0.3
 2.2
 3.9
 3.5
 0.6





41 ANK1 ankyrin-like1 831855 At5g02620 3.6 3.3
 2.9
 3085.0
 1.5
 0.2
 0.8
 1.1
 0.6
 2.3
 1.2




42 AT2G42190 rho GTPase-activating gacO-like protein 818819 At2g42190 3.6 2.7
 3.5
 1669.7
 1.5
 0.5
 2.1
 1.4
 0.9
 4.0
 2.1
1.6
 0.5
0.2
 0.5
-0.5
 1.4
1.1
 -0.1
-0.5
 0.9
0.7
43 AT1G69980 structural polyprotein 843335 At1g69980 3.5 3.1
 3.0
 2190.9
 0.4
 0.4
 1.1
 0.6
 0.3
 2.2
 2.9
 1.2
-0.2
 0.8
-0.7
 -0.3
 0.4
 1.1
44 AT2G14045 c-Myc-binding protein 815889 At2g14045 3.5 3.8






0.6
 1.6
 -0.1
 0.0
 1.3
 1.3
 1.6
45 ARASP chloroplastic membrane metallo proteases 817809 At2g32480 3.5 3.4
 2.7
 3066.7
 1.9
 0.4
 2.0
 1.5
 1.9
 -1.1
 2.7
2.0
 0.9
-0.6
 -0.6
-1.3
 0.4
 0.4
 2.5
46 AT1G07700 Thioredoxin superfamily protein 837283 At1g07700 3.5 3.0
 3.1
 224.2
 1.6
 0.8
 1.4
 3.2
 2.0
 1.0
 0.7
 1.0
 0.7
 0.8
 0.1
 1.3
47 AT3G45900 Ribonuclease P protein subunit P38-like protein 823733 At3g45900 3.5 4.2
 1.9
 1362.6
 0.5
 0.3
 1.4
 1.2
 1.5
 1.5
 0.8
 0.6
 0.3
 1.6
 -1.4
 0.3
48 AT5G05830 RING/FYVE/PHD zinc finger superfamily protein 830468 At5g05830 3.5 3.7






4.3
 0.9
 1.2
1.2
 1.2
0.9
 2.8
2.3
 2.7
0.7
 1.7
0.6
49 NUDT12 nudix hydrolase homolog 12 837845 At1g12880 3.5 2.4
 3.7
 352.5
 0.1
 2.2
 1.8
 0.1
 2.8
 2.4
 1.0
0.1
 -0.3
 0.3
0.2
-0.1
 0.8
0.5
50 AT3G26000 Ribonuclease inhibitor 822197 At3g26000 3.5 3.4
 2.6
 3319.9
 -0.4
 -0.0
 1.1
 0.6
 1.4
 3.2
 3.0
 0.8
0.1
 1.4
0.7
 0.2
-0.1
 0.3
0.3
 1.8
0.8
The preparation time of this page was 0.9 [sec].