Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-r.6   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.9   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.notissue   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.tis   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.str   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.hor   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.bio   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.lig   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-e.1   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-u.4   CLE44   CLAVATA3/ESR-RELATED 44 
 gma-u.4   100789083   CLAVATA3/ESR (CLE)-related protein TDIF 
 gma-u.4   100802727   CLAVATA3/ESR (CLE)-related protein TDIF-like protein 
 ppo-u.4   18096545   CLAVATA3/ESR (CLE)-related protein 41 

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Top 50 coexpressed genes to CLE41 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath999   Biosynthesis of various plant secondary metabolites; Including: Crocin biosynthesis, Cannabidiol biosynthesis, Mugineic acid biosynthesis, Pentagalloylglucose biosynthesis, Benzoxazinoid biosynthesis, Gramine biosynthesis, Coumarin biosynthesis, Furanocoumarin biosynthesis, Hordatine biosynthesis, Podophyllotoxin biosynthesis  2 54 2.08
 ath460   Cyanoamino acid metabolism  1 71 -
 ath40   Pentose and glucuronate interconversions  1 108 -
 ath270   Cysteine and methionine metabolism  1 124 -
 ath500   Starch and sucrose metabolism  1 172 -

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ath:CLE41 (CLAVATA3/ESR-RELATED 41) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
CLE41
ath-r.6
for
CLE41
ath-m.9
for
CLE41
ath-m.4.notissue
for
CLE41
ath-m.4.tis
for
CLE41
ath-m.4.str
for
CLE41
ath-m.4.hor
for
CLE41
ath-m.4.bio
for
CLE41
ath-m.4.lig
for
CLE41
ath-e.1
for
CLE41
ath-u.4
for
CLE44
gma-u.4
for
100789083
gma-u.4
for
100802727
ppo-u.4
for
18096545
1 CLE44 CLAVATA3/ESR-RELATED 44 826934 At4g13195 5.8 4.9
 5.1
 196.6
 2.7
 2.7
 0.0
 1.1
 0.4
 3.3
 5.8
 14.9
 14.9
2 ATL4H RING/U-box superfamily protein 6241286 At4g17905 5.5 5.7
 3.8
2.1
 4.2
 -0.0
 1.4
 0.4
 1.6
 2.4
0.8
 1.7
1.6
 2.1
1.3
 1.3
0.2
3 AT1G68430 uncharacterized protein 843172 At1g68430 5.3 4.2
 5.0
 834.2
 3.1
 2.7
 1.1
 1.6
 0.8
 2.5
 2.0
1.7
 1.2
1.0
 0.1
-0.0
 1.0
0.4
4 AT3G15680 Ran BP2/NZF zinc finger-like superfamily protein 820811 At3g15680 5.2 4.4
 4.6
 24.2
 3.2
 3.3
 2.4
 4.8
 3.1
 1.8
 2.3
0.1
 1.3
0.8
 1.8
0.4
 4.0
2.9
5 AT2G01990 XRI1-like protein 814730 At2g01990 5.1 5.1
 3.8
 891.9
 1.4
 1.9
 0.4
 1.4
 0.0
 1.2
 3.3
2.8
 3.9
2.6
 2.6
2.3
 1.4
0.3
6 CYCD3;1 CYCLIN D3;1 829564 At4g34160 5.1 5.4
 3.4
 191.4
 2.9
 3.9
 2.6
 1.3
 2.3
 4.0
 2.4
1.9
 2.6
1.7
 1.4
1.4
 1.0
0.8
7 LSH4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 821908 At3g23290 4.9 4.1
 4.4
 436.8
 3.3
 2.8
 0.9
 0.5
 1.9
 2.1
 2.7
2.1
 3.4
3.3
 4.6
3.8
 1.8
1.7
8 AT1G14630 XRI1-like protein 838025 At1g14630 4.7 5.1






2.6
 3.3
2.8
 3.9
2.6
 2.6
2.3
 1.4
0.3
9 AT5G53830 VQ motif-containing protein 835464 At5g53830 4.6 4.5
 3.4
 2625.6
 1.4
 2.1
 -0.7
 -0.2
 -1.1
 3.7
 2.7
2.0
 3.7
2.6
 2.9
2.8
 0.4
0.2
10 AT2G36570 Leucine-rich repeat protein kinase family protein 818230 At2g36570 4.6 3.7
 4.2
 314.7
 2.8
 3.4
 1.8
 3.4
 1.2
 2.3
 1.0
 1.8
0.6
 1.7
1.4
 0.2
11 ANT Integrase-type DNA-binding superfamily protein 829931 At4g37750 4.4 4.5
 3.1
 670.0
 1.6
 3.1
 1.4
 2.4
 1.6
 2.6
 0.7
 1.7
1.6
 1.7
1.4
 1.3
0.9
12 EXPA4 expansin A4 818553 At2g39700 4.2 3.7
 3.6
 261.1
 0.5
 2.7
 1.0
 1.7
 -1.9
 2.0
 3.6
2.3
 1.7
1.1
 1.6
1.0
 0.4
0.2
13 PLP6 PATATIN-like protein 6 818507 At2g39220 4.2 3.9
 3.4
 3215.7
 0.6
 2.2
 1.7
 -0.8
 2.7
 1.7
 2.5
1.2
 0.2
-0.4
 -0.3
-0.7
 0.2
-1.2
14 AT5G62960 UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein 836416 At5g62960 4.2 3.5
 3.7
 1022.4
 1.0
 2.0
 0.2
 1.0
 0.9
 1.4
 0.8
0.3
 1.7
1.0
 1.4
0.9
 -0.4
-1.0
15 AT1G80520 Sterile alpha motif (SAM) domain-containing protein 844391 At1g80520 4.1 3.4
 3.7
 268.0
 0.8
 3.1
 -0.1
 2.9
 0.4
 1.2
 1.2
0.1
 1.8
0.1
 1.8
-0.6
 0.2
-0.0
16 AT5G44400 FAD-binding Berberine family protein 834466 At5g44400 4.1 3.4
 3.7
 575.7
 1.7
 4.0
 0.7
 0.8
 0.4
 2.4
 2.1
1.1
 1.1
1.1
 1.5
1.1
 0.8
0.8
17 AT5G09460 transcription factor bHLH143 830805 At5g09460 4.0 4.4
228.5




1.9
 2.1
1.3
 2.1
1.5
 2.6
2.1
 -0.1
-0.3
18 WOX4 WUSCHEL related homeobox 4 841113 At1g46480 4.0 4.2






2.1
 3.2
 2.1
1.9
 2.3
1.5
 1.2
0.5
19 EXPB3 expansin B3 828940 At4g28250 3.9 3.3
 3.5
 565.1
 1.4
 2.8
 1.6
 1.5
 1.7
 2.1
 1.7
0.9
 -0.1
-0.8
 0.3
-0.2
 -0.6
-1.2
20 AT3G25130 acidic leucine-rich nuclear phosphoprotein 32 family B protein 822104 At3g25130 3.9 4.0
 2.8
 1126.5
 1.4
 3.5
 0.5
 -0.0
 0.8
 2.4
 2.0
 1.5
 2.5
 -0.1
21 AT4G39190 nucleolar-like protein 830074 At4g39190 3.9 3.8
 2.9
 931.0
 1.4
 1.9
 0.7
 1.2
 0.2
 1.4
 1.3


22 AT2G44830 Protein kinase superfamily protein 819092 At2g44830 3.9 3.5
 3.2
 108.5
 1.6
 4.0
 0.8
 2.3
 1.2
 1.3
 0.8
 1.4
1.0
 1.5
1.1
 0.8
-0.3
23 AT5G41460 transferring glycosyl group transferase (DUF604) 834147 At5g41460 3.9 3.6
 3.1
 793.7
 0.8
 1.1
 -0.2
 2.5
 1.3
 1.7
 1.8
0.4
 1.4
0.6
 1.4
0.7
 -0.4
-0.9
24 AT1G28390 Protein kinase superfamily protein 839736 At1g28390 3.8 3.4
 3.3
 11483.4
 2.0
 0.9
 -0.8
 -0.9
 -0.1
 1.8
 1.1
-1.6
 1.7
1.4
 1.4
0.8
 0.9
0.0
25 AT3G48440 Zinc finger C-x8-C-x5-C-x3-H type family protein 824003 At3g48440 3.8 3.7
 2.9
 89.8
 -0.3
 3.6
 0.2
 1.8
 2.1
 2.8
 1.4
0.1
 0.9
0.9
 0.3
0.1
 -0.3
-0.9
26 AT2G46630 serine/arginine repetitive matrix protein 3768746 At2g46630 3.8 3.8
 2.8
 167.4
 1.9
 3.2
 1.4
 1.5
 0.3
 3.9
 0.6
 0.7
0.3
 -0.1
-0.2
 4.1
2.7
27 AT5G22930 enabled-like protein (DUF1635) 832357 At5g22930 3.8 3.9






2.1
 3.1
1.6
 2.7
2.1
 2.5
2.3
 0.8
0.8
28 OPS LOW protein: UPF0503-like protein, putative (DUF740) 820060 At3g09070 3.8 3.7
 2.8
 1996.4
 2.1
 1.4
 0.5
 -0.3
 -0.2
 1.1
 1.2
0.5
 1.0
1.0
 1.3
1.2
 0.3
-0.4
29 ASL9 ASYMMETRIC LEAVES 2-like 9 838223 At1g16530 3.8 2.7
 3.9
 2503.9
 1.2
 1.2
 1.3
 0.3
 -0.2
 1.3
 1.8
1.8
 2.1
2.0
 2.3
2.1
 0.2
-0.4
30 OBP3 OBF-binding protein 3 824703 At3g55370 3.8 4.0
 2.5
 1828.2
 0.0
 1.6
 1.2
 0.6
 0.8
 2.5
 2.0
1.1
 3.1
2.3
 2.5
1.7
 3.6
3.5
31 NAS4 nicotianamine synthase 4 842096 At1g56430 3.8 3.0
 3.5
 51.9
 1.8
 3.1
 2.6
 2.9
 1.4
 2.8
 1.6
0.8
 0.8
0.8
 1.3
0.5
 3.2
2.6
32 SRF1 STRUBBELIG-receptor family 1 816618 At2g20850 3.8 2.7
 3.8
 706.8
 4.3
 2.3
 0.7
 0.8
 1.2
 1.4
 0.9
0.5
 1.7
0.7
 1.7
1.0
 0.4
-0.2
33 LBD4 LOB domain-containing protein 4 840020 At1g31320 3.7 3.1
 3.4
 1067.3
 1.8
 2.4
 2.3
 0.7
 1.0
 0.5
 1.8
1.8
 2.1
2.0
 2.3
2.1
 0.2
-0.4
34 RALFL34 ralf-like 34 836842 At5g67070 3.7 2.8
 3.7
 67.4
 1.7
 2.7
 0.8
 2.6
 2.5
 4.0
 1.8
 0.1
-1.0
 0.6
-0.4
 1.4
-0.3
35 AT1G47400 uncharacterized protein 841144 At1g47400 3.7 3.2
 3.2
 749.8
 1.4
 2.0
 0.9
 0.8
 -0.9
 2.1
 1.7
1.4


36 ACI1 ALC-interacting protein 1 831905 At5g01370 3.7 3.8
 2.6
 744.9
 1.4
 2.4
 1.0
 2.1
 0.3
 1.7
 0.9


37 AT5G40960 transmembrane protein, putative (DUF 3339) 834098 At5g40960 3.7 2.8
 3.6
 909.5
 -1.0
 0.9
 0.1
 3.1
 -0.4
 0.3
 2.2
 1.3
0.3
 0.9
0.6
 1.4
38 XTH32 xyloglucan endotransglucosylase/hydrolase 32 818259 At2g36870 3.7 3.4
 3.0
 917.0
 5.4
 1.0
 1.8
 1.9
 1.8
 2.4
 0.5
0.2
 2.3
1.2
 1.4
0.6
 1.4
0.8
39 AT1G54200 DNA mismatch repair Msh6-like protein 841860 At1g54200 3.7 3.8
 2.6
 503.9
 1.7
 2.0
 0.2
 2.4
 -0.1
 0.4
 2.3
1.1
 1.6
1.3
 2.1
1.7
 0.9
0.4
40 AT5G42720 Glycosyl hydrolase family 17 protein 834281 At5g42720 3.7 2.9
 3.4
 290.1
 1.9
 2.2
 0.5
 5.1
 1.6
 0.9
 1.3
-0.2
 0.2
-0.9
 0.1
-0.7
 1.6
1.0
41 AT3G44940 enabled-like protein (DUF1635) 823629 At3g44940 3.6 3.4
 2.9
 965.1
 1.5
 2.3
 -0.2
 1.3
 0.5
 1.3
 3.1
1.6
 2.7
2.1
 2.5
2.3
 0.8
0.8
42 HCA2 Dof-type zinc finger DNA-binding family protein 836414 At5g62940 3.6 4.1
 2.2
 1275.5
 1.1
 1.1
 1.0
 1.5
 -0.5
 2.1
 -0.3
 0.9
0.8
 0.3
-0.6
 2.9
2.1
43 AT2G43800 Actin-binding FH2 (formin homology 2) family protein 818984 At2g43800 3.6 3.3
 3.0
 214.9
 1.9
 2.5
 1.3
 3.2
 2.0
 2.2
 1.3
-1.4
 2.0
1.4
 2.2
1.5
 0.4
0.1
44 AT3G13980 SKI/DACH domain protein 820612 At3g13980 3.6 3.9
 2.3
 3736.9
 2.3
 1.2
 1.0
 0.7
 1.5
 1.9
 2.3
1.1
 1.6
1.3
 2.1
1.7
 0.9
0.4
45 AT3G27400 Pectin lyase-like superfamily protein 822361 At3g27400 3.6 3.6
 2.7
 3101.4
 2.1
 1.8
 1.3
 -0.1
 2.0
 3.3
 3.0
2.8
 2.9
2.3
 3.0
1.9
 0.0
-0.1
46 AT4G30020 PA-domain containing subtilase family protein 829125 At4g30020 3.6 3.2
 3.1
 24.7
 3.8
 3.7
 1.7
 2.5
 -1.0
 0.9
 2.6
0.5
 1.3
0.0
 0.1
-0.1
 -0.5
-1.4
47 AT1G05710 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 837078 At1g05710 3.6 2.9
 3.4
 5606.7
 1.7
 2.0
 1.7
 -1.1
 -0.6
 1.9
 2.3
0.4
 1.1
0.4
 0.3
0.2
 2.4
0.3
48 BGLU47 beta-glucosidase 47 828264 At4g21760 3.6 2.8
 3.4
 426.7
 2.2
 2.0
 1.2
 2.0
 1.0
 1.9
 0.7
0.4
 1.4
0.7
 3.6
0.3
 -0.5
-0.6
49 PXY Leucine-rich repeat protein kinase family protein 836269 At5g61480 3.6 3.3
 2.9
 2227.0
 3.3
 1.6
 1.0
 1.6
 0.9
 -0.0
 1.2
 3.1
2.4
 3.1
2.4
 0.7
0.4
50 WIP3 WIP domain protein 3 837349 At1g08290 3.6 3.9






1.1
 2.2
0.2
 1.5
1.4
 1.6
1.5
 1.1
0.9
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