Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   AT3G62240   RING/U-box superfamily protein 
 ath-r.6   AT3G62240   RING/U-box superfamily protein 
 ath-m.9   AT3G62240   RING/U-box superfamily protein 
 ath-m.4.notissue   AT3G62240   RING/U-box superfamily protein 
 ath-m.4.tis   AT3G62240   RING/U-box superfamily protein 
 ath-m.4.str   AT3G62240   RING/U-box superfamily protein 
 ath-m.4.hor   AT3G62240   RING/U-box superfamily protein 
 ath-m.4.bio   AT3G62240   RING/U-box superfamily protein 
 ath-m.4.lig   AT3G62240   RING/U-box superfamily protein 
 ath-e.1   AT3G62240   RING/U-box superfamily protein 
 ath-u.4   AT2G47090   zinc ion binding/nucleic acid binding protein 
 gma-u.4   100799878   E3 ubiquitin-protein ligase ZNF598 
 gma-u.4   100780426   E3 ubiquitin-protein ligase ZNF598 
 ppo-u.4   7455399   uncharacterized LOC7455399 
 ppo-u.4   7465219   E3 ubiquitin-protein ligase HEL2 
 ppo-u.4   7481432   E3 ubiquitin-protein ligase ZNF598 
 mtr-u.4   11430027   uncharacterized LOC11430027 
 sly-u.4   101255131   E3 ubiquitin-protein ligase ZNF598 
 osa-u.4   4338285   E3 ubiquitin-protein ligase hel2 

close


Top 50 coexpressed genes to AT3G62240 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath3040   Spliceosome  5 180 4.05
 ath514   Other types of O-glycan biosynthesis  1 13 -
 ath562   Inositol phosphate metabolism  1 79 -
 ath3013   Nucleocytoplasmic transport  1 103 -
 ath3015   mRNA surveillance pathway  2 119 -

close


ath:AT3G62240 (RING/U-box superfamily protein) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
AT3G62240
ath-r.6
for
AT3G62240
ath-m.9
for
AT3G62240
ath-m.4.notissue
for
AT3G62240
ath-m.4.tis
for
AT3G62240
ath-m.4.str
for
AT3G62240
ath-m.4.hor
for
AT3G62240
ath-m.4.bio
for
AT3G62240
ath-m.4.lig
for
AT3G62240
ath-e.1
for
AT3G62240
ath-u.4
for
AT2G47090
gma-u.4
for
100799878
gma-u.4
for
100780426
ppo-u.4
for
7455399
ppo-u.4
for
7465219
ppo-u.4
for
7481432
mtr-u.4
for
11430027
sly-u.4
for
101255131
osa-u.4
for
4338285
1 AT2G26920 Ubiquitin-associated/translation elongation factor EF1B protein 817233 At2g26920 8.4 8.0
 6.5
 3.5
 3.8
 4.7
 1.8
 4.3
 1.2
 6.3
 3.2
0.6
 5.0
3.8
 2.8
2.4
 3.9
1.5
 2.5
1.2
 5.1
3.4
 5.9
3.6
 5.1
2.6
 3.8
2 AT3G48060 BAH and TFIIS domain-containing protein 823961 At3g48060 7.1 7.3






4.3
 0.7
0.7
 7.2
6.4
 5.1
4.1
 2.6
2.3
 1.6
1.2
 3.5
2.9
 4.8
 6.3
4.8
 3.1
2.8
3 AT5G37380 Chaperone DnaJ-domain superfamily protein 833712 At5g37380 7.0 6.4
 5.7
 1228.5
 0.6
 1.0
 1.8
 1.6
 0.7
 3.1
 2.7
-0.8







4 AT1G31870 pre-mRNA-splicing factor of RES complex protein 840077 At1g31870 7.0 7.0
 5.0
 147.8
 1.5
 2.0
 1.7
 2.8
 2.3
 3.1
 2.3
 3.9
 5.2
 2.5
 2.5
 1.1
 2.8
2.3
 1.2
 2.4
5 AT2G19270 mitotic checkpoint protein PRCC-carboxy-term protein 816444 At2g19270 6.9 7.5
 4.4
 340.6
 0.8
 1.4
 1.8
 2.8
 4.0
 0.8
 1.0
 4.5
3.5
 3.9
2.1
 2.7
 -0.0
 3.4
 2.5
 2.1
 2.2
6 AT2G36480 pre-mRNA cleavage complex 2 Pcf11-like protein 818222 At2g36480 6.9 6.6
 5.4
 102.7
 2.2
 1.4
 3.0
 2.1
 0.1
 6.8
 3.3
 6.0
4.4
 5.5
4.6
 3.0
 0.7
 3.2
 9.3
3.1
 4.8
1.7
 4.7
7 AT5G42940 RING/U-box superfamily protein 834306 At5g42940 6.9 6.6
 5.3
 19.6
 1.4
 2.2
 4.0
 2.9
 2.5
 4.6
 2.2
2.2
 5.8
4.4
 4.6
3.3
 2.6
0.8
 2.5
2.4
 5.0
2.6
 4.8
4.5
 4.6
3.1
 2.2
8 ELF6 Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein 830303 At5g04240 6.9 5.5
 6.4
 49.1
 3.0
 2.4
 3.7
 2.1
 2.3
 3.5
 2.0
 4.2
1.9
 3.8
1.3
 1.4
0.6
 0.1
0.0
 3.0
1.4
 2.2
 2.4
 1.9
9 ABCF4 general control non-repressible 4 824619 At3g54540 6.8 7.2
 4.6
 500.0
 0.6
 2.3
 1.0
 0.9
 1.4
 4.6
 2.7
 0.8
0.2
 1.0
0.9
 2.1
1.4
 0.6
-0.8
 3.0
2.8
 4.7
0.5
 3.0
 2.4
10 GTE4 global transcription factor group E4 837133 At1g06230 6.8 6.3
 5.4
 62.2
 2.8
 2.3
 2.5
 2.4
 1.7
 6.6
 2.8
2.5
 5.5
5.0
 2.3
2.0
 4.3
2.9
 2.7
2.5
 3.7
2.3
 4.7
4.6
 6.1
3.8
 2.2
1.9
11 SWP RNA polymerase II transcription mediator 819634 At3g04740 6.6 6.6
 4.9
 103.4
 3.7
 1.4
 4.2
 2.5
 2.2
 4.4
 1.1
 4.1
3.1
 2.3
1.3
 1.7
0.5
 3.5
1.2
 3.8
2.2
 4.6
 6.9
 4.6
3.1
12 EMB3011 RNA helicase family protein 831141 At5g13010 6.6 4.6
 6.7
 76.9
 5.7
 2.7
 2.0
 2.7
 1.6
 2.7
 0.8
 6.4
5.7
 5.9
5.8
 3.5
 2.7
 4.5
 5.7
2.5
 5.0
1.0
 4.6
13 AT1G04300 TRAF-like superfamily protein 839551 At1g04300 6.6 6.8
 4.5
 467.2
 2.6
 1.7
 1.7
 3.0
 1.3
 3.6
 2.2
2.1
 7.9
7.2
 8.8
7.3
 3.1
1.7
 3.7
2.4
 4.5
2.6
 6.0
2.6
 5.5
3.0
 2.1
14 CDKE;1 cyclin-dependent kinase E;1 836481 At5g63610 6.5 7.4
 3.9
 393.3
 3.2
 2.8
 1.7
 1.6
 0.1
 4.0
 1.5
 4.1
3.7
 5.2
4.6
 0.9
0.9
 2.2
-0.4
 1.9
1.3
 0.5
 2.8
 1.4
15 AT1G61690 phosphoinositide binding protein 842466 At1g61690 6.5 6.0
 5.3
 564.7
 4.7
 1.6
 1.5
 2.5
 0.7
 4.4
 2.0
 4.1
4.0
 3.0
2.8
 3.2
1.3
 2.1
1.8
 4.3
3.4
 2.4
 3.7
 1.2
16 VIP5 plus-3 domain-containing protein 842395 At1g61040 6.5 6.1
 5.1
 219.5
 2.4
 2.2
 1.6
 2.5
 3.0
 2.6
 1.7
 5.0
3.0
 4.2
1.9
 1.4
0.2
 3.9
1.0
 4.1
3.9
 2.5
-0.4
 4.2
 2.5
17 SUO protein SUO 823960 At3g48050 6.4 6.5






5.0
 0.7
0.7
 7.2
6.4
 5.1
4.1
 2.6
2.3
 1.6
1.2
 3.5
2.9
 4.8
 6.3
4.8
 3.1
2.8
18 AT1G29370 RNA polymerase II degradation factor-like protein (DUF1296) 839812 At1g29370 6.4 6.9






6.7
 1.6
1.4
 5.4
4.2
 6.4
4.6
 1.0
0.4
 2.2
-0.6
 2.8
1.7
 3.5
 4.7
2.4
 1.7
0.9
19 AT3G58050 uncharacterized protein 824974 At3g58050 6.4 6.9
 4.2
 73.0
 2.0
 2.0
 1.1
 3.0
 1.0
 4.3
 1.6
1.5
 3.4
3.0
 3.3
3.2
 1.8
1.2
 -0.1
-0.4
 4.9
2.6
 7.4
5.5
 5.4
 3.8
2.3
20 NUP1 nuclear pore complex protein 820234 At3g10650 6.4 5.2
 5.8
 148.9
 2.3
 3.1
 1.5
 1.0
 0.5
 6.0
 1.3
 5.6
4.4
 6.2
4.0
 2.8
1.5
 0.9
-0.6
 3.1
2.6
 4.3
3.9
 4.2
3.1
 2.5
21 AT1G29350 RNA polymerase II degradation factor-like protein (DUF1296) 839809 At1g29350 6.4 6.9






6.4
 1.6
1.4
 5.4
4.2
 6.4
4.6
 1.0
0.4
 2.2
-0.6
 2.8
1.7
 3.5
 4.7
2.4
 1.7
0.9
22 MTM2 Myotubularin-like phosphatases II superfamily 830333 At5g04540 6.4 6.0
 5.1
 1.4
 3.1
 4.5
 2.8
 3.2
 3.3
 3.9
 1.9
1.0
 1.5
0.9
 1.8
1.4
 2.3
2.0
 2.7
2.2
 1.8
0.8
 3.7
 1.9
 1.5
23 AT1G11480 eukaryotic translation initiation factor-like protein 837691 At1g11480 6.3 6.4
 4.6
 107.1
 2.4
 1.7
 3.6
 3.0
 1.6
 3.3
 2.1
 5.3
3.8
 3.7
3.6
 1.8
0.9
 2.3
1.8
 4.9
2.1
 4.1
 4.7
 1.9
24 UBP16 ubiquitin-specific protease 16 828558 At4g24560 6.3 5.2
 5.7
 2.0
 4.2
 3.2
 3.4
 5.4
 1.9
 4.1
 1.8
1.5
 4.9
3.7
 2.7
2.5
 3.9
2.3
 2.5
1.2
 3.3
2.2
 4.3
3.9
 5.1
 1.2
0.5
25 AT3G57340 DnaJ heat shock amino-terminal domain protein (DUF1977) 824901 At3g57340 6.3 7.5
 3.4
 110.4
 2.1
 2.3
 3.0
 2.1
 0.9
 3.8
 -0.4
 4.7
1.8
 3.0
2.3
 1.7
 1.7
 3.0
 2.7
 4.1
 1.4
26 AT5G42950 GYF domain-containing protein 834307 At5g42950 6.3 5.8
 5.0
 93.0
 1.7
 3.9
 1.5
 1.2
 1.0
 4.4
 2.3
 4.2
4.0
 5.1
3.8
 2.2
 0.7
 1.7
 3.0
 4.8
 3.5
27 AT2G44410 RING/U-box superfamily protein 819048 At2g44410 6.3 7.0






2.8
 1.2
 2.7
1.4
 2.1
1.1
 1.3
0.2
 1.3
-0.7
 2.0
0.9
 3.0
-0.3
 3.1
2.5
28 AT5G64270 splicing factor 836548 At5g64270 6.3 6.3
 4.5
 13.0
 1.6
 3.2
 4.8
 2.5
 0.5
 5.4
 0.8
 5.0
2.9
 2.6
1.7
 0.4
-0.1
 0.6
0.3
 3.7
1.8
 3.9
 5.3
 2.1
29 AT3G48195 Phox (PX) domain-containing protein 823976 At3g48195 6.2 6.8






3.3
 1.1
 6.0
4.9
 5.2
4.5
 1.9
1.4
 2.5
2.4
 3.6
0.3
 5.3
 3.8
 2.5
30 NRB4 mediator of RNA polymerase II transcription subunit 15a-like protein 838147 At1g15780 6.2 4.4
 6.3
 23.7
 2.5
 2.7
 2.5
 2.8
 0.9
 7.0
 1.3
 4.2
3.1
 3.4
2.6
 3.9
1.4
 3.2
3.1
 2.8
1.8
 5.6
2.2
 3.4
 2.7
31 AT5G20600 ribosomal RNA processing-like protein 832182 At5g20600 6.2 5.2
 5.5
 1330.7
 0.1
 1.9
 1.6
 1.4
 0.9
 3.7
 1.5
 0.3
0.2
 1.4
0.9
 0.3
 1.3
 0.8
 4.0
 1.5
 1.2
32 UBP23 ubiquitin-specific protease 23 835910 At5g57990 6.2 4.6
 6.1
 909.7
 0.2
 2.3
 1.0
 1.6
 0.5
 4.1
 0.6
 2.9
1.8
 3.6
1.6
 1.8
-0.1
 2.7
1.2
 3.3
1.6
 1.3
 0.4
 0.9
33 AT2G22720 SPT2 chromatin protein 816802 At2g22720 6.1 7.1
 3.5
 229.7
 2.5
 2.4
 0.8
 1.2
 0.0
 3.5
 2.3
 5.0
3.9
 4.1
2.9
 2.4
1.4
 3.5
2.3
 4.5
0.9
 4.1
 3.7
 6.4
34 AT4G24200 Transcription elongation factor (TFIIS) family protein 828521 At4g24200 6.1 6.8
 3.7
 327.4
 3.3
 2.3
 -0.7
 2.6
 -0.4
 3.9
 0.7
 6.7
5.2
 3.5
3.2
 2.9
2.7
 0.3
0.3
 4.0
4.0
 3.3
 4.9
 2.8
35 AT2G47330 P-loop containing nucleoside triphosphate hydrolases superfamily protein 819346 At2g47330 6.0 5.7
 4.8
 84.0
 2.8
 3.0
 1.7
 2.0
 -0.4
 5.3
 2.2
 5.0
4.2
 2.9
2.7
 2.1
1.0
 0.2
0.1
 3.0
2.1
 6.3
 4.6
 3.8
36 AT3G12640 RNA binding (RRM/RBD/RNP motifs) family protein 820444 At3g12640 6.0 4.3
 6.1
 609.5
 3.2
 1.6
 1.7
 1.3
 1.1
 0.8
 3.2
 7.8
4.4
 6.7
4.3
 3.0
2.1
 0.4
-0.0
 5.7
3.1
 3.7
3.4
 6.0
 2.1
1.9
37 AT4G19190 zinc knuckle (CCHC-type) family protein 827658 At4g19190 6.0 6.1






2.2
 2.2
 5.3
4.2
 10.0
6.3
 3.2
 1.6
 4.5
 2.3
 1.2
 1.9
38 AT5G52530 dentin sialophosphoprotein-like protein 835329 At5g52530 6.0 5.8
 4.5
 107.8
 3.2
 3.0
 1.3
 2.1
 0.4
 4.4
 0.7







39 VOZ2 vascular plant one zinc finger protein 2 818841 At2g42400 5.9 6.6
 3.7
 112.5
 4.4
 1.8
 2.7
 2.7
 2.3
 3.5
 2.6







40 NAC017 NAC domain containing protein 17 840318 At1g34190 5.9 6.7
 3.5
 171.5
 4.1
 2.6
 0.7
 2.9
 1.3
 3.6
 1.3
0.9
 6.2
5.3
 2.3
2.1
 4.2
3.6
 -0.5
-1.0
 3.2
3.0
 2.1
 3.1
0.3
41 AT1G48040 Protein phosphatase 2C family protein 841222 At1g48040 5.9 5.6
 4.7
 72.5
 1.8
 3.7
 1.8
 2.7
 -0.0
 2.4
 -0.8
-1.3
 2.9
2.7
 1.1
0.8
 2.3
1.6
 -0.2
-1.2
 2.3
1.0
 2.8
1.6
 1.5
1.2
 2.7
0.9
42 UPF3 Smg-4/UPF3 family protein 840295 At1g33980 5.9 5.0
 5.2
 4.5
 1.8
 4.1
 5.3
 1.6
 1.1
 1.3
 2.2
 2.9
1.9
 1.7
1.6
 2.5
1.6
 1.8
1.0
 2.7
2.3
 4.6
3.9
 4.6
2.6
 2.9
43 SKIP chromatin protein family 844055 At1g77180 5.9 5.4
 4.8
 151.7
 3.8
 2.5
 2.1
 2.2
 1.0
 3.3
 1.7
 3.9
3.3
 2.7
2.1
 2.6
2.1
 2.0
1.7
 5.9
4.5
 5.0
 4.4
 2.9
44 AT3G63070 Tudor/PWWP/MBT domain-containing protein 825482 At3g63070 5.9 5.4
 4.7
 2.6
 2.4
 5.4
 2.8
 1.5
 -0.1
 4.4
 2.1
1.6
 4.9
4.3
 1.9
1.7
 2.2
 0.5
 3.0
 4.2
2.0
 1.9
 2.4
1.9
45 MOS1 modifier of snc1 828570 At4g24680 5.9 5.8
 4.3
 427.7
 1.8
 2.5
 0.5
 1.5
 1.3
 6.2
 2.5
 5.0
5.0
 2.8
2.1
 3.0
2.3
 3.4
2.3
 2.7
2.4
 6.4
3.6
 4.0
 4.2
46 EMF1 embryonic flower 1 (EMF1) 831025 At5g11530 5.8 4.5
 5.6
 85.3
 3.0
 1.9
 3.9
 2.8
 0.3
 4.4
 2.2
 4.5
3.4
 3.7
3.6
 1.9
1.6
 -0.1
-1.6
 1.4
0.6
 2.7
 2.3
47 AT1G14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein 838027 At1g14650 5.7 6.4
 3.4
 1635.6
 0.7
 1.5
 2.9
 0.9
 3.3
 4.8
 1.4
-0.1
 4.3
2.4
 3.4
1.1
 2.0
2.0
 1.9
1.6
 1.5
1.0
 4.9
 2.2
1.5
 3.5
48 AT1G34220 Regulator of Vps4 activity in the MVB pathway protein 840321 At1g34220 5.7 6.3
 3.5
 246.4
 1.3
 2.1
 2.7
 2.2
 0.5
 4.5
 2.0
 2.0
1.8
 2.2
1.3
 2.5
1.4
 -0.2
-1.2
 1.9
-0.3
 3.6
 0.7
 1.2
49 SEC Tetratricopeptide repeat (TPR)-like superfamily protein 819579 At3g04240 5.7 5.4
 4.4
 170.3
 1.8
 3.0
 1.1
 1.5
 0.2
 4.3
 0.3
 3.6
2.2
 2.7
1.5
 1.7
1.2
 2.6
1.7
 2.8
2.6
 3.2
 2.3
1.5
 2.3
1.5
50 AT5G07970 dentin sialophosphoprotein-like protein 830691 At5g07970 5.6 5.6






5.5
 3.6
2.8
 4.8
4.5
 3.3
3.2
 2.5
2.1
 2.8
2.7
 2.6
1.7
 4.0
3.7
 4.6
4.0
 3.1
0.7
The preparation time of this page was 1.4 [sec].