Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   PAP2   phytochrome-associated protein 2 
 ath-r.6   PAP2   phytochrome-associated protein 2 
 ath-m.9   PAP2   phytochrome-associated protein 2 
 ath-m.4.notissue   PAP2   phytochrome-associated protein 2 
 ath-m.4.tis   PAP2   phytochrome-associated protein 2 
 ath-m.4.str   PAP2   phytochrome-associated protein 2 
 ath-m.4.hor   PAP2   phytochrome-associated protein 2 
 ath-m.4.bio   PAP2   phytochrome-associated protein 2 
 ath-m.4.lig   PAP2   phytochrome-associated protein 2 
 ath-e.1   PAP2   phytochrome-associated protein 2 
 gma-u.4   100803754   auxin-responsive protein IAA27 
 gma-u.4   100795203   auxin-responsive protein IAA27 
 ppo-u.4   112327922   auxin-responsive protein IAA27-like 
 ppo-u.4   18100429   auxin-responsive protein IAA27 
 ppo-u.4   7483540   auxin-responsive protein IAA27 
 mtr-u.4   25497379   auxin-responsive protein IAA27 
 mtr-u.4   11432380   auxin-responsive protein IAA27 
 mtr-u.4   11408105   auxin-responsive protein IAA27 
 sly-u.4   IAA8   auxin-responsive protein IAA8 
 sly-u.4   IAA27   auxin-responsive protein IAA27 
 osa-u.4   4338160   auxin-responsive protein IAA17-like 
 osa-u.4   4325890   auxin-responsive protein IAA3-like 
 osa-u.4   4340939   auxin-responsive protein IAA21-like 

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Top 50 coexpressed genes to PAP2 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath360   Phenylalanine metabolism  1 33 -
 ath350   Tyrosine metabolism  1 41 -
 ath260   Glycine, serine and threonine metabolism  1 70 -
 ath230   Purine metabolism  1 87 -
 ath4075   Plant hormone signal transduction  3 291 -

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ath:PAP2 (phytochrome-associated protein 2) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
PAP2
ath-r.6
for
PAP2
ath-m.9
for
PAP2
ath-m.4.notissue
for
PAP2
ath-m.4.tis
for
PAP2
ath-m.4.str
for
PAP2
ath-m.4.hor
for
PAP2
ath-m.4.bio
for
PAP2
ath-m.4.lig
for
PAP2
ath-e.1
for
PAP2
gma-u.4
for
100803754
gma-u.4
for
100795203
ppo-u.4
for
112327922
ppo-u.4
for
18100429
ppo-u.4
for
7483540
mtr-u.4
for
25497379
mtr-u.4
for
11432380
mtr-u.4
for
11408105
sly-u.4
for
IAA8
sly-u.4
for
IAA27
osa-u.4
for
4338160
osa-u.4
for
4325890
osa-u.4
for
4340939
1 AT3G45160 Putative membrane lipoprotein 823652 At3g45160 6.4 5.1
 6.1
 31.9
 1.6
 3.1
 0.9
 4.3
 -0.1
 4.8












2 MOL1 Leucine-rich repeat transmembrane protein kinase family protein 835209 At5g51350 5.7 5.2
 4.6
 16.3
 3.5
 2.2
 1.5
 3.6
 -0.5
 2.8
 3.9
2.1
 0.0
-0.2
 -0.2
-0.4
 0.5
-0.1
 -0.2
-0.3
 1.2
 1.1
 2.3
 4.0
 3.1


3 AT1G47670 Transmembrane amino acid transporter family protein 841177 At1g47670 5.6 5.7
 4.0
 53.4
 3.7
 5.0
 2.7
 2.6
 1.6
 3.5
 0.3
0.2
 0.9
0.7
 1.0
0.6
 1.2
0.8
 0.9
0.7
 -0.3
-0.3
 2.4
1.2
 6.2
0.8
 2.5
-0.8
 2.1
-0.1
 2.2
0.4
 0.8
0.6
 1.2
-0.4
4 PXY Leucine-rich repeat protein kinase family protein 836269 At5g61480 5.4 4.2
 5.1
 1040.3
 3.3
 2.6
 2.1
 1.7
 -0.8
 2.1
 2.6
2.5
 0.1
-0.2
 0.1
-1.3
 0.9
-1.0
 0.1
0.1
 -0.0
-1.5
 3.3
0.5
 3.2
0.5
 3.0
2.9
 2.4
2.2
 1.4
 1.4
 1.3
5 BRL2 BRI1-like 2 814726 At2g01950 5.3 4.4
 4.8
 128.1
 3.9
 3.7
 3.2
 2.4
 1.0
 2.4
 3.1
0.6
 0.7
0.4
 -0.1
-0.9
 -0.2
-0.2
 0.1
-0.1
 -0.1
 3.8
 3.4
 1.3
 0.9
 0.4
 0.5
 -0.1
6 NIK2 NSP-interacting kinase 2 822143 At3g25560 5.3 4.3
 4.9
 524.6
 2.9
 1.6
 1.4
 1.2
 -0.3
 3.4
 3.5
2.8
 2.0
1.6
 0.1
-0.4
 1.3
0.5
 0.5
-0.2
 2.8
1.1
 4.4
2.5
 4.1
3.4
 2.0
0.9
 2.8
1.2
 0.9
0.7
 1.2
0.8
 1.3
0.4
7 AT2G20550 HSP40/DnaJ peptide-binding protein 816577 At2g20550 5.3 4.9
 4.3
 8087.8
 2.7
 -0.1
 1.2
 -0.0
 0.1
 3.0

0.1
 0.3
 -0.1







8 SEOa sieve element occlusion protein 821096 At3g01670 5.2 4.1
 5.0
 871.2
 2.5
 1.8
 3.2
 0.4
 1.7
 2.6












9 ACL5 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 832073 At5g19530 5.2 5.3
 3.7
 116.9
 2.6
 1.9
 2.0
 3.8
 1.9
 1.6
 1.6
1.1
 1.4
0.9
 1.6
1.1
 2.0
1.4
 1.0
0.9
 2.6
1.8
 3.2
-1.4
 6.4
1.2
 1.7
1.0
 3.1
1.7
 0.4
 0.9
 0.1
10 AT2G36570 Leucine-rich repeat protein kinase family protein 818230 At2g36570 5.2 4.9
 4.1
 107.9
 3.6
 3.5
 3.3
 1.8
 0.3
 3.3
 3.7
2.4
 0.1
-0.2
 -0.8
 -0.3
 1.2
 0.8
0.4
 4.8
3.2
 5.2
3.4
 2.1
 1.1
 0.3
 1.0
 0.5
11 AT1G31710 Copper amine oxidase family protein 840058 At1g31710 5.2 3.9
 5.0
 852.9
 0.9
 2.9
 3.3
 -0.4
 -0.4
 2.9
 -0.2
-0.2
 -0.6
-0.6
 0.1
-2.1
 0.1
-1.9
 0.0
-1.1
 0.9
0.8
 -0.0
-0.7
 0.2
-0.3

0.1
0.1
 0.9
0.3
 -0.2
-0.3
12 APT2 adenine phosphoribosyl transferase 2 844345 At1g80050 5.0 4.4
 4.3
 37.7
 1.9
 3.3
 2.6
 1.8
 1.8
 0.8
 1.9
1.8
 0.4
-0.1
 2.0
0.7
 1.1
1.0
 3.0
0.7
 0.5
0.3
 0.5
0.4
 1.9
0.2
 2.7
-0.9
 1.9
1.8
 2.0
1.2
 1.0
0.8
 0.8
-0.1
13 BAM3 Leucine-rich receptor-like protein kinase family protein 827774 At4g20270 4.9 4.0
 4.5
 3.5
 2.1
 4.7
 0.6
 3.8
 -0.4
 1.6
 2.9
2.8
 2.0
1.2
 1.0
0.1
 1.2
0.2
 0.8
0.0
 1.1
1.0
 2.8
2.2
 3.1
2.1
 2.6
2.1
 3.2
2.2
 1.6
1.4
 2.9
1.4
 3.3
0.5
14 PUP4 purine permease 4 839967 At1g30840 4.9 4.2
 4.2
 173.6
 1.0
 2.6
 3.5
 1.5
 0.5
 2.6
 0.0
-0.4
 1.5
1.2
 -0.3
 -0.7
 2.2


0.0
 1.4
 0.2
0.2
 1.0
0.1
 0.4
0.3
15 AT5G56530 tRNA-splicing ligase (DUF239) 835754 At5g56530 4.8 5.3






4.9
 2.1
2.0
 0.9
0.6
 0.7
0.1
 1.5
0.7
 2.2
1.0
 0.7
-0.6
 2.6
2.4
 1.8
1.6
 2.5
2.2
 2.1
0.7
 2.1
1.6
 1.7
1.4
 2.2
2.2
16 ATHB-15 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 841645 At1g52150 4.6 3.6
 4.3
 576.0
 5.5
 1.8
 1.0
 1.3
 0.8
 3.9
 3.0
2.7
 0.5
0.3
 1.4
1.4
 1.8
1.0
 2.9
2.1
 1.8
0.3
 1.9
1.3
 5.9
3.7
 3.1
1.7
 4.0
2.2
 1.2
 0.4
 1.2
17 AT1G68810 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 843213 At1g68810 4.6 4.1
 3.8
 89.4
 3.5
 2.6
 1.8
 2.5
 0.7
 1.7
 1.9
1.1
 0.8
0.7
 1.3
0.6
 2.2
1.4
 1.1
0.7
 0.8
0.2
 2.0
1.7
 4.6
4.5
 0.6
0.4
 1.1
0.9
 0.3
0.1
 0.8
0.3
 0.6
0.3
18 EXL7 EXORDIUM like 7 818081 At2g35150 4.6 3.7
 4.2
 10573.5
 3.0
 0.3
 2.5
 -0.1
 0.1
 2.0
 1.5
 -0.6
 1.7
0.2
 2.0
1.0
 1.6
0.8
 0.5
 1.3
 0.5
 2.0
0.4
 1.7
0.5
 0.2
 0.4
 0.0
19 SARK Leucine-rich repeat protein kinase family protein 829175 At4g30520 4.5 3.7
 4.1
 121.2
 1.7
 1.9
 1.9
 2.1
 0.5
 1.8
 2.2
0.6
 -0.1
-0.6
 0.3
0.2
 1.1
1.0
 1.8
1.6
 -0.3
 5.0
 2.3
 1.7
 0.1
 2.2
 1.2
 1.3
20 AT2G40480 WEB family protein (DUF827) 818643 At2g40480 4.5 4.1
 3.7
 92.7
 4.3
 3.7
 2.6
 2.3
 -1.1
 4.1
 1.6
1.3
 0.2
-0.1
 -0.3
-1.1
 0.2
-0.4
 1.3
0.7
 0.7
0.5
 3.7
2.7
 3.1
3.0
 2.0
0.8
 0.5
0.3
 1.8
-0.5
 0.8
0.6
 2.1
0.2
21 AT5G48800 Phototropic-responsive NPH3 family protein 834938 At5g48800 4.5 3.6
 4.2
 491.8
 3.6
 2.3
 4.2
 1.0
 1.3
 3.5
 1.9
1.0
 0.8
-0.4
 -0.7
 0.4
 0.9
 1.7
 1.4
 4.1
 1.9
-0.0
 1.0
0.1


22 AT5G57130 Clp amino terminal domain-containing protein 835819 At5g57130 4.4 4.1
 3.5
 856.0
 1.3
 1.9
 0.3
 1.7
 -0.4
 1.7
 3.3
3.2
 0.0
-0.4
 -0.1
-0.4
 0.5
-0.1
 -0.3
-0.9
 0.7
0.6
 1.6
1.2
 4.2
2.8
 2.5
 1.3
 0.7
0.3
 0.6
-0.1
 0.5
0.1
23 SULTR3;5 sulfate transporter 3;5 832080 At5g19600 4.3 3.7
 3.8
 379.5
 0.0
 3.0
 2.3
 0.3
 0.7
 3.0
 1.4
1.1
 -0.2
-0.4
 -0.6
-0.8
 -0.0
-0.3
 0.3
-0.7
 0.1
-0.0
 2.0
1.0
 0.3
-0.4
 2.1
1.1
 2.0
1.7
 0.5
0.4
 -0.1
-0.2
 0.3
-0.2
24 MIPS3 myo-inositol-1-phosphate synthase 3 830881 At5g10170 4.3 3.7
 3.7
 453.4
 2.1
 2.1
 1.2
 1.3
 -0.3
 3.3
 2.5
2.1
 -0.2
-0.4
 0.5
0.1
 1.0
0.3
 0.7
-0.8
 0.5
-1.4
 2.6
-0.9
 1.3
-0.4
 1.1
-0.5
 0.7
0.5
 -0.7
 -0.6
 0.0
25 AT1G22030 BPS1-like protein 838808 At1g22030 4.3 4.3
 3.1
 2966.8
 2.4
 0.9
 1.0
 0.6
 -0.1
 2.1
 1.8
0.6
 0.4
0.2
 0.4
-0.4
 -0.2
-0.3
 2.9
1.5
 0.8
0.6
 2.2
1.9
 3.7
2.1
 1.8
-0.1
 0.6
-0.1
 0.5
 0.1
 0.1
26 AT5G05960 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 830481 At5g05960 4.3 2.6
 4.8
 242.5
 1.8
 1.3
 2.7
 2.3
 0.7
 1.5
 1.6
1.6
 0.8
-0.0
 -0.2
-0.4
 -0.3
-0.6
 0.5
-0.1
 1.3
 0.7
 1.4
 0.9
0.2
 1.3
1.2
 0.8
0.7
 1.3
0.3
 1.3
-0.5
27 SEOR1 sieve element occlusion amino-terminus protein 821097 At3g01680 4.3 3.0
 4.3
 343.4
 2.2
 2.2
 2.4
 0.6
 0.1
 2.1
 1.4
1.2
 2.1
1.3
 0.2
0.0
 0.6
0.2
 0.1
0.1
 0.9
0.6
 0.9
0.2
 1.6
1.6
 1.8
1.7
 2.2
2.1


28 MT3 metallothionein 3 820771 At3g15353 4.2 3.1
 4.3
 1823.5
 0.8
 2.7
 0.0
 1.0
 1.0
 2.2
 2.4
2.1
 2.2
1.4
 -0.1
-1.4
 -0.3
-1.7
 0.5
-0.2







29 AT4G22160 uncharacterized protein 828305 At4g22160 4.2 4.0
 3.3
 30.3
 2.8
 2.6
 3.1
 3.4
 1.6
 3.2

1.1
1.0
 1.5
1.2
 1.9
1.2







30 REV Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 836190 At5g60690 4.2 3.7
 3.6
 75.4
 2.6
 2.9
 1.1
 2.9
 -1.4
 1.9
 3.2
2.0
 0.3
0.0
 0.8
0.6
 1.1
0.4
 2.0
1.9
 0.5
0.0
 2.7
2.7
 5.5
3.6
 3.0
3.0
 2.1
2.1
 2.4
1.6
 1.4
1.3
 3.4
2.4
31 UNE12 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 828126 At4g02590 4.2 4.0
 3.3
 6665.6
 2.4
 0.3
 0.9
 1.4
 -1.6
 3.1
 0.8
0.5
 -0.2
-0.2
 -0.0
-0.1
 0.1
-0.1
 1.5
1.0
 0.8
0.2
 1.3
-0.3
 2.0
0.3
 1.3
-0.5
 1.2
1.1
 0.7
0.5
 0.9
0.4
 1.2
0.2
32 ARR11 response regulator 11 843096 At1g67710 4.2 3.8
 3.5
 8791.2
 0.7
 0.4
 1.3
 -0.0
 -0.0
 3.9
 2.3
1.9
 1.7
0.1
 -0.3
-0.5
 0.5
-0.5
 1.9
1.1
 2.9
0.5
 0.5
0.3
 2.2
2.0
 0.1
 1.2
 2.1
 2.1
 1.8
33 AT1G69080 Adenine nucleotide alpha hydrolases-like superfamily protein 843240 At1g69080 4.1 3.9
 3.2
 61.6
 2.3
 3.1
 0.8
 1.2
 -0.1
 3.0

0.8
 0.6
 1.3
 1.0
-0.3
 4.1
1.0
 2.3
-0.7
 -1.1
 -1.0


34 OFP7 ovate family protein 7 816365 At2g18500 4.1 4.3
 2.8
 12195.6
 0.5
 0.2
 0.2
 -0.8
 0.2
 2.3












35 LSH4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 821908 At3g23290 4.0 3.1
 3.9
 92.0
 2.7
 2.8
 2.8
 0.7
 -1.9
 3.1
 2.8
2.6
 1.3
1.1
 1.3
1.2
 1.5
1.3
 2.5
2.2
 1.9
1.8
 3.5
3.5
 3.2
2.7
 3.4
3.2
 2.2
2.2
 1.8
1.7
 2.2
2.1
 1.6
0.9
36 AT3G60490 Integrase-type DNA-binding superfamily protein 825220 At3g60490 4.0 3.6
 3.5
 2179.4
 1.5
 1.3
 1.3
 -0.2
 1.5
 2.3












37 PAP1 phytochrome-associated protein 1 820898 At3g16500 4.0 2.6
 4.4
 4018.0
 4.1
 1.1
 0.1
 -0.7
 2.0
 2.6
 2.1
0.5
 1.1
0.4
 1.3
1.0
 1.6
1.2
 2.0
1.3
 3.9
0.4
 0.4
-0.6
 3.1
-0.0
 1.8
 2.4
 0.9
0.6
 1.4
0.6
 0.3
0.1
38 AT1G51355 cyclin-dependent kinase inhibitor SMR3-like protein 841559 At1g51355 4.0 4.1






1.5
 0.2
-0.3
 -1.1
-1.2
 0.6
 1.5
 1.0
 1.3
 1.7
 2.0




39 ENODL9 early nodulin-like protein 9 821604 At3g20570 3.9 3.0
 3.8
 1481.8
 1.8
 1.6
 2.2
 0.7
 2.6
 0.7
 0.5
0.3
 0.9
0.5
 0.1
0.1
 -0.0
-0.3
 0.3
-0.7
 0.9
0.5
 0.5
0.1
 2.2
1.9
 0.8
 2.3
 0.6
 0.5
 1.2
40 PP2-A1 phloem protein 2-A1 827728 At4g19840 3.9 2.8
 3.9
 840.9
 0.5
 2.1
 -1.1
 2.7
 1.9
 1.8
 1.5
1.0
 2.5
2.1
 -1.2
-1.7
 -1.5
-1.6
 -1.1
-1.3
 2.0
 3.4
 2.0
 0.3
 0.1
 -0.9
 0.5
 -0.7
41 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 824593 At3g54260 3.9 2.9
 3.8
 356.4
 3.4
 4.9
 2.2
 0.4
 0.8
 1.4
 2.2
1.5
 0.2
-0.3
 1.2
 1.3
 2.1
 0.9
0.6
 3.0
1.0
 3.4
2.2
 1.5
 2.2


42 LAX3 uncharacterized protein 844105 At1g77690 3.8 3.5
 3.1
 423.6
 3.1
 3.2
 2.9
 1.5
 -1.1
 1.4
 2.0
1.8
 1.5
1.4
 1.3
1.1
 2.0
1.8
 3.2
3.0
 1.7
0.6
 3.1
2.1
 4.1
2.5
 4.0
2.5
 1.8
1.6
 2.0
1.3
 3.4
1.6
 0.9
0.9
43 AT3G13510 carboxyl-terminal peptidase, putative (DUF239) 820553 At3g13510 3.8 3.5
 3.1
 32.5
 1.5
 3.7
 1.7
 2.6
 -0.2
 0.9
 2.1
2.0
 0.9
0.6
 0.7
0.1
 1.5
0.7
 2.2
1.0
 0.7
-0.6
 2.6
2.4
 1.8
1.6
 2.5
2.2
 2.1
0.7
 2.1
1.6
 1.7
1.4
 2.2
2.2
44 LSH10 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 818861 At2g42610 3.8 3.2
 3.4
 43.9
 1.8
 3.9
 1.3
 1.4
 1.4
 5.9
 2.8
2.6
 1.3
1.1
 1.3
1.2
 1.5
1.3
 2.5
2.2
 1.9
1.8
 3.5
3.5
 3.2
2.7
 3.4
3.2
 2.2
2.2
 1.8
1.7
 2.2
2.1
 1.6
0.9
45 GSTU23 glutathione S-transferase TAU 23 844167 At1g78320 3.8 3.1
 3.4
 571.6
 0.5
 2.5
 -0.2
 0.1
 -1.0
 0.8
 0.3
0.2
 1.0
0.5
 1.2
0.7
 1.4
1.2
 2.3
1.9
 1.0
0.5
 1.2
0.6
 0.2
0.2
 2.4
0.8
 4.6
1.9
 0.2
-0.3
 0.2
-0.1
 0.5
0.4
46 AT1G63310 uncharacterized protein 842637 At1g63310 3.7 2.3
 4.2
 1021.0
 2.4
 2.3
 0.6
 0.4
 2.0
 1.2
 0.8
0.6
 1.5
0.9
 0.4
0.3
 0.1
0.1
 0.5
0.5
 1.0
 0.4
 1.4
 1.3
0.9
 1.8
1.3
 1.0
 0.5
 1.5
47 AT2G44830 Protein kinase superfamily protein 819092 At2g44830 3.7 3.4
 3.1
 518.5
 1.3
 2.6
 2.0
 0.5
 -0.5
 2.9
 2.7
2.0
 0.2
0.1
 0.8
-0.0
 1.1
0.9
 2.3
0.1
 -0.0
-0.8
 3.1
2.4
 4.6
2.7
 1.7
0.8
 2.4
-0.4
 2.3
1.1
 1.6
1.0
 2.9
0.9
48 DR4 drought-repressed 4 843668 At1g73330 3.7 2.9
 3.5
 283.1
 0.6
 2.8
 3.5
 -0.2
 0.5
 0.7
 1.0
1.0
 1.2
1.0
 0.0
-0.1
 0.1
-0.3
 0.8
0.6
 1.0
0.8
 0.0
0.0
 0.9
0.5
 0.2
0.2
 2.1
0.4
 -1.7
 -1.4
 -0.5
49 AGP31 arabinogalactan protein 31 839723 At1g28290 3.7 3.0
 3.4
 564.9
 2.1
 2.7
 2.6
 1.7
 3.1
 2.2
 1.2
 -1.0
 0.4
0.1
 0.5
0.3
 0.8
-0.2
 0.6
0.0
 2.1
-0.3
 2.3
0.0
 1.9
0.6
 2.6
0.9
 -0.1
-0.2
 -0.2
-0.3
 0.3
-0.1
50 BGLU33 beta glucosidase 33 817847 At2g32860 3.7 2.8
 3.6
 335.9
 0.7
 1.5
 2.2
 1.6
 0.4
 2.1












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