Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-r.6   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.9   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.notissue   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.tis   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.str   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.hor   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.bio   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.lig   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-e.1   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-u.4   AT1G10690   cyclin-dependent kinase inhibitor 
 gma-u.4   100820224   cyclin-dependent protein kinase inhibitor SMR6 
 gma-u.4   100790537   cyclin-dependent protein kinase inhibitor SMR6 
 ppo-u.4   7460759   cyclin-dependent protein kinase inhibitor SMR6 
 ppo-u.4   7469049   cyclin-dependent protein kinase inhibitor SMR6 
 ppo-u.4   7461311   cyclin-dependent protein kinase inhibitor SMR6 
 mtr-u.4   25501448   cyclin-dependent protein kinase inhibitor SMR6 
 mtr-u.4   11411968   cyclin-dependent protein kinase inhibitor SMR6 
 mtr-u.4   11434424   cyclin-dependent protein kinase inhibitor SMR6 
 sly-u.4   101257136   uncharacterized protein 
 sly-u.4   101259901   cyclin-dependent protein kinase inhibitor SMR6 

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Top 50 coexpressed genes to AT5G40460 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath3420   Nucleotide excision repair  2 55 2.07
 ath3430   Mismatch repair  1 32 -
 ath3030   DNA replication  1 43 -
 ath3022   Basal transcription factors  1 55 -
 ath4016   MAPK signaling pathway - plant  2 139 -

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ath:AT5G40460 (cyclin-dependent kinase inhibitor SMR3-like protein) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
AT5G40460
ath-r.6
for
AT5G40460
ath-m.9
for
AT5G40460
ath-m.4.notissue
for
AT5G40460
ath-m.4.tis
for
AT5G40460
ath-m.4.str
for
AT5G40460
ath-m.4.hor
for
AT5G40460
ath-m.4.bio
for
AT5G40460
ath-m.4.lig
for
AT5G40460
ath-e.1
for
AT5G40460
ath-u.4
for
AT1G10690
gma-u.4
for
100820224
gma-u.4
for
100790537
ppo-u.4
for
7460759
ppo-u.4
for
7469049
ppo-u.4
for
7461311
mtr-u.4
for
25501448
mtr-u.4
for
11411968
mtr-u.4
for
11434424
sly-u.4
for
101257136
sly-u.4
for
101259901
1 AT5G02220 cyclin-dependent kinase inhibitor 831792 At5g02220 5.1 4.1
 4.7
 71.9
 2.1
 3.2
 0.1
 1.9
 1.7
 2.4
 0.8









2 AGP1 arabinogalactan protein 1 836552 At5g64310 4.1 4.2
 2.9
 425.8
 2.7
 2.0
 0.4
 1.9
 -0.2
 5.1










3 AT1G32928 Avr9/Cf-9 rapidly elicited protein 3766886 At1g32928 3.9 4.4






2.8
 0.1
0.0
 0.8
0.5
 1.2
1.2







4 CDKD1;1 cyclin-dependent kinase D1;1 843704 At1g73690 3.8 1.9
 4.6
 1070.2
 2.0
 1.5
 -0.1
 1.3
 2.0
 1.2
 1.0
0.5
 2.2
0.6
 0.8
-0.2
 0.5
0.4
 -0.4
-0.8
 0.0
-0.3
 -2.2
 -0.7
 0.2
 -0.2
 -0.3
5 AT5G07730 uncharacterized protein 830666 At5g07730 3.7 3.0
 3.5
 408.5
 0.3
 1.4
 0.6
 2.1
 1.1
 0.9
 1.1
0.7
 0.5
 -0.5


0.5
 0.8
 0.4
 -0.3
 0.6
6 AT1G05710 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 837078 At1g05710 3.6 3.8
 2.4
 959.1
 2.1
 2.6
 0.5
 0.8
 -0.8
 0.6
 -0.8
-1.3
 0.6
-0.1
 0.1
-0.3
 1.1
-0.9
 2.0
0.1
 1.0
0.4
 -0.9
 -0.7
 0.9
 1.4
 -0.1
7 ERF13 ethylene-responsive element binding factor 13 819093 At2g44840 3.6 2.7
 3.5
 20.7
 1.3
 3.2
 1.6
 2.3
 2.0
 1.6
 0.3
-0.3
 0.4
0.1
 3.0
2.5
 2.1
1.7
 -0.2
-0.4
 1.0
0.9
 2.0
-0.6
 0.2
-0.9
 -0.4
-1.0
 1.9
1.4
 0.8
-0.1
8 MKS1 MAP kinase substrate 1 821400 At3g18690 3.5 3.0
 3.1
 344.6
 0.7
 2.2
 1.2
 1.3
 -0.0
 2.6
 1.5
1.2
 0.7
0.5
 1.8
1.0
 1.1
0.8
 0.9
-0.1
 0.2
-0.1
 2.5
2.4
 -0.0
-0.4
 -0.1
-0.1
 0.5
0.2
 -0.3
-1.1
9 CMPG2 CYS, MET, PRO, and GLY protein 2 836587 At5g64660 3.5 3.4
 2.6
 245.5
 -0.7
 2.6
 -0.1
 1.4
 -0.4
 3.6
 0.2
-0.3
 1.4
0.8
 1.6
1.1
 0.2
0.0
 0.7
0.4
 2.1
0.7
 1.8
1.4
 0.8
0.5
 1.1
0.3
 2.4
-0.8
 -0.3
-0.5
10 AT3G10930 uncharacterized protein 820264 At3g10930 3.5 3.9
 2.1
 238.5
 0.2
 3.5
 1.2
 0.8
 -3.3
 3.1










11 AT4G24110 NADP-specific glutamate dehydrogenase 828511 At4g24110 3.4 2.8
 3.2
 2403.5
 1.1
 -0.1
 1.1
 2.3
 1.2
 2.9
 -0.7

-0.7
 0.0
 0.2


-0.1
 -0.8
12 AT3G09480 Histone superfamily protein 820105 At3g09480 3.4 3.3
 2.6
 488.8
 0.4
 2.5
 -0.6
 1.3
 -0.3
 1.5
 1.1
1.0
 3.8
3.6
 -0.1
-0.1
 1.6
-0.1
 1.2
-0.1
 2.7
2.1
 0.7
0.7
 0.7
0.4
 3.0
2.9
 4.4
4.1
 4.6
4.2
13 ERF4 ethylene responsive element binding factor 4 820752 At3g15210 3.4 3.6
 2.2
 788.3
 -0.3
 1.7
 0.1
 1.4
 -0.5
 2.7
 1.1
0.8
 1.1
0.7
 2.2
1.0
 1.7
1.4
 1.3
1.1
 2.2
1.6
 2.1
1.7
 1.2
0.5
 0.4
-0.4
 0.9
0.5
 1.1
0.0
14 AT2G30020 Protein phosphatase 2C family protein 817553 At2g30020 3.3 4.0






3.3
 0.5
-0.9
 0.7
-0.2
 0.9
-0.7
 1.1
1.1
 0.3
-0.3
 1.6
0.3
 2.0
1.0
 0.4
-0.6
 0.3
-0.4
 1.3
-0.9
 0.4
0.3
15 BEH3 BES1/BZR1 homolog 3 827623 At4g18890 3.3 2.5
 3.3
 600.8
 1.8
 0.9
 0.5
 1.7
 2.9
 1.0
 1.6
1.3
 0.3
0.3
 2.1
1.2
 1.5
1.5
 0.8
0.4
 2.1
1.8
 1.7
-0.4
 0.1
-0.8
 1.9
0.2
 0.1
-0.0
 -0.6
-1.1
16 AT1G52720 uncharacterized protein 841705 At1g52720 3.3 3.5
 2.2
 1533.1
 1.1
 -0.1
 1.0
 1.8
 0.7
 2.0
 1.4
1.0
 -0.0
-0.1
 0.6
0.5
 -0.3
-1.1
 1.7
1.5
 1.5
0.4
 3.0
 -0.6
 -0.6
 2.3
 0.5
17 AT5G44060 embryo sac development arrest protein 834429 At5g44060 3.3 3.0
 2.8
 527.6
 -0.3
 2.7
 1.1
 0.4
 0.3
 0.8
 1.6
0.7
 1.1
0.7
 2.8
1.0
 1.1
 1.8
 -0.7
 0.9
0.0
 0.3
0.2
 -0.4
-0.5
 0.9
 1.1
18 AT1G68340 hypothetical protein (DUF1639) 843163 At1g68340 3.3 3.3
 2.4
 1054.0
 0.1
 1.1
 -0.3
 1.5
 -0.7
 0.4
 1.3
0.2
 0.8
0.6
 0.6
0.5
 1.1
0.1
 1.9
0.5
 1.5
0.2
 2.0
0.8
 0.6
0.5
 0.8
0.2
 1.3
0.3
 1.5
1.3
19 AT1G01130 CBL-interacting Serine/Threonine-kinase 839359 At1g01130 3.2 1.5
 4.0
 344.4
 1.5
 1.7
 0.9
 1.8
 2.2
 2.6










20 RDUF2 zinc finger (C3HC4-type RING finger) family protein 836074 At5g59550 3.2 3.7
 1.8
 74.6
 -0.1
 2.9
 0.9
 2.0
 -0.1
 3.3
 1.3
0.0
 1.1
0.5
 1.2
1.1
 1.4
1.2
 0.4
0.2
 3.3
2.1
 2.5
2.5
 1.1
1.0
 0.8
0.2
 0.9
-0.4
 -0.2
-0.6
21 AT5G43420 RING/U-box superfamily protein 834362 At5g43420 3.2 3.6






2.5
 1.2
-0.3
 -0.1
-0.1
 0.2
-0.9
 0.6
0.1
 0.5
0.3
 1.3
-0.4
 0.8
0.0
 0.2
-0.1
 0.7
0.4
 0.1
 0.2
22 AT3G09032 josephin-like protein 2745876 At3g09032 3.1 3.2






0.9
 1.9
1.4







-0.2
 1.9
23 PUB29 plant U-box 29 821402 At3g18710 3.1 2.9
 2.5
 122.7
 1.0
 3.8
 -2.1
 -0.4
 -0.3
 2.7
 0.2
-0.3
 1.4
0.8
 1.6
1.1
 0.2
0.0
 0.7
0.4
 2.1
0.7
 1.8
1.4
 0.8
0.5
 1.1
0.3
 2.4
-0.8
 -0.3
-0.5
24 FBS1 F-box family protein 842428 At1g61340 3.1 2.8
 2.6
 500.4
 1.4
 1.7
 -0.1
 1.9
 -1.4
 3.6
 1.4
0.2
 0.1
-0.3
 0.0
-0.1
 1.3
-0.7
 -0.4
-0.5
 1.0
0.5
 1.8
 -0.4
 -0.1
 0.5
0.3
 1.1
0.4
25 AT1G59970 Matrixin family protein 842291 At1g59970 3.1 2.5
 2.9
 2041.3
 0.3
 2.1
 0.2
 0.9
 -0.3
 1.3
 1.1
0.6
 1.4
0.2
 0.3
0.2
 1.3
0.8
 0.4
0.4
 0.6
-0.4
 0.9
-0.2
 1.3
0.6
 0.2
-0.1
 0.0
-0.1
 -0.1
-0.5
26 PEPR2 PEP1 receptor 2 838353 At1g17750 3.1 2.0
 3.3
 170.4
 2.5
 2.2
 2.2
 1.9
 0.2
 1.3
 -1.6
-1.6
 -0.8
-0.9
 0.9
-0.4
 1.1
 0.4
 0.5
 2.4
-0.2
 0.2
-1.0
 0.6
-0.7
 0.4
 -0.4
27 AT1G23710 hypothetical protein (DUF1645) 838981 At1g23710 3.0 3.2
 2.1
 342.7
 -0.7
 2.2
 -0.3
 1.3
 -0.5
 2.2
 1.5
0.9
 1.4
0.4
 0.6
0.5
 -0.6
-0.9
 0.0
-0.1
 -0.0
-0.5
 2.6
1.9
 1.1
0.6
 0.6
-0.1
 0.5
0.2
 0.3
0.2
28 pPLAIIIbeta patatin-like protein 6 824660 At3g54950 3.0 3.0
 2.3
 4453.1
 1.0
 0.5
 0.2
 1.0
 -0.3
 0.5
 0.2
-0.5
 0.2
0.1
 -0.3
-0.5
 0.4
-0.7
 -0.0
-0.8
 1.8
-0.3
 0.5
 -0.2
 -0.5
 0.4
 -1.5
29 NUDT21 nudix hydrolase homolog 21 843688 At1g73540 3.0 3.3
 1.9
 161.4
 -0.5
 3.3
 -0.6
 1.1
 0.7
 1.9
 0.6
-0.0
 0.6
0.3
 0.9
0.8
 2.5
1.2
 0.8
0.3
 0.9
0.8
 2.4
0.4
 0.8
0.2
 0.9
0.3
 1.1
-0.1
 0.7
0.1
30 AT4G39570 Galactose oxidase/kelch repeat superfamily protein 830111 At4g39570 3.0 2.8
 2.4
 435.9
 1.3
 4.5
 -0.4
 -1.5
 0.3
 1.0










31 AT2G27830 uncharacterized protein 817330 At2g27830 2.9 2.9
 2.2
 1094.9
 -1.2
 0.9
 1.8
 2.4
 0.2
 1.0
 1.6
 0.6
0.2
 1.5
1.4
 1.1
0.7
 0.6
-2.0
 0.1
0.0
 1.2
0.8
 0.6
0.1
 0.3
0.1
 1.6
1.1
 1.1
0.6
32 AT2G42760 DUF1685 family protein 818876 At2g42760 2.9 3.5
 1.6
 457.6
 0.0
 2.6
 1.1
 1.3
 0.2
 2.4
 0.2
 1.3
0.7
 2.8
1.6
 1.6
0.7
 0.7
0.7
 0.5
-0.4
 1.4
1.3
 1.6
-0.4
 0.5
-0.3
 3.3
0.6
 0.8
0.4
33 DBR1 debranching enzyme 1 829305 At4g31770 2.9 3.1
 2.0
 1830.4
 1.1
 1.2
 -0.8
 1.3
 0.5
 0.2
 -0.6
 -0.6
 -0.3
 0.8
 0.9
 0.1
 0.2
 0.2
 0.1
 -1.2
 -0.3
34 NAC096 NAC domain containing protein 96 834702 At5g46590 2.9 2.8
 2.3
 2675.4
 1.7
 1.3
 1.1
 2.0
 -1.1
 1.4
 0.5
 -0.6
-1.0
 -0.1
-0.6
 0.6
-1.9
 0.8
0.0
 0.9
0.0
 -0.2
 1.0
 -0.3
 1.3
0.4
 0.0
-1.2
35 AT5G03390 hypothetical protein (DUF295) 831852 At5g03390 2.9 2.7
 2.4
 574.3
 2.1
 1.5
 0.4
 0.9
 1.8
 0.7
 0.1
-0.1









36 MYB15 myb domain protein 15 821904 At3g23250 2.9 1.8
 3.2
 143.7
 0.6
 2.7
 0.6
 1.4
 2.2
 0.7
 0.6
-1.5
 1.8
1.5
 3.2
2.6
 1.1
0.3
 0.7
-0.3
 0.7
-0.0
 2.3
0.6
 0.7
-0.8
 0.1
-0.0
 1.7
1.6
 0.5
0.4
37 NUDT4 nudix hydrolase homolog 4 838410 At1g18300 2.9 3.5






2.6
 0.6
-0.0
 0.6
0.3
 0.9
0.8
 2.5
1.2
 0.8
0.3
 0.9
0.8
 2.4
0.4
 0.8
0.2
 0.9
0.3
 1.1
-0.1
 0.7
0.1
38 ERF-1 ethylene responsive element binding factor 1 827464 At4g17500 2.9 2.8
 2.3
 121.7
 -0.2
 2.8
 0.4
 2.2
 -0.4
 3.0
 0.3
-0.3
 0.4
0.1
 3.0
2.5
 2.1
1.7
 -0.2
-0.4
 1.0
0.9
 2.0
-0.6
 0.2
-0.9
 -0.4
-1.0
 1.9
1.4
 0.8
-0.1
39 AT2G37470 Histone superfamily protein 818324 At2g37470 2.9 2.3
 2.7
 1340.4
 1.8
 1.7
 0.0
 -0.3
 0.9
 2.4
 1.1
1.0
 3.8
3.6
 -0.1
-0.1
 1.6
-0.1
 1.2
-0.1
 2.7
2.1
 0.7
0.7
 0.7
0.4
 3.0
2.9
 4.4
4.1
 4.6
4.2
40 AT3G14870 hypothetical protein (DUF641) 820716 At3g14870 2.9 3.2






4.2
 -0.4
-1.5
 0.9
0.7
 1.7
1.5
 1.9
0.4
 0.5
-0.2
 1.7
-0.2
 0.4
-1.7
 0.3
-0.6
 0.2
-0.7
 -0.1
 1.2
41 AT5G45630 senescence regulator (Protein of unknown function, DUF584) 834603 At5g45630 2.9 2.2
 2.8
 1834.7
 0.3
 0.5
 -1.0
 1.7
 1.9
 2.9
 1.0
0.3
 1.7
0.7
 1.2
-0.2
 0.7
 1.2
 -0.7
 1.8
 -0.4
 -0.6

42 AT2G22890 Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein 816820 At2g22890 2.9 2.5
 2.5
 4713.9
 1.3
 1.0
 -0.8
 0.3
 0.0
 0.8
 0.9
-0.1
 0.3
-0.5
 0.1
-0.5
 0.4
 -1.0
 -0.4
 -0.1
 0.3
 -0.0
 -0.1
 -0.4
43 AT3G53650 Histone superfamily protein 28719403 At3g53650 2.9 3.2






0.1
 1.1
1.0
 3.8
3.6
 -0.1
-0.1
 1.6
-0.1
 1.2
-0.1
 2.7
2.1
 0.7
0.7
 0.7
0.4
 3.0
2.9
 4.4
4.1
 4.6
4.2
44 MKK9 MAP kinase kinase 9 843685 At1g73500 2.9 3.1
 1.9
 258.4
 -0.7
 2.4
 0.2
 1.8
 -0.3
 2.4
 1.0
 0.1
-0.4
 2.5
1.5
 2.7
1.6
 -0.1
-0.7
 0.4
-0.4
 1.4
 -0.1
 -0.8
 0.7
 -0.0
45 AT1G20310 syringolide-induced protein 838619 At1g20310 2.9 2.4
 2.6
 112.2
 -0.5
 2.3
 -0.0
 1.8
 0.6
 2.0
 -0.2
-0.9
 1.3
0.5
 1.4
1.0
 -0.6
 -1.0
 0.4
 4.2
3.0
 1.0
0.1
 0.6
0.4
 0.9
0.6
 0.2
-0.4
46 AT3G57450 uncharacterized protein 28719408 At3g57450 2.8 3.3






4.2
 -1.2

-0.3
 -0.3
 1.3




47 RPA2 replicon protein A2 816985 At2g24490 2.8 2.9
 2.0
 7862.6
 1.9
 0.5
 0.0
 -0.5
 -1.1
 0.1
 -0.1
-0.9
 3.6
2.9
 -0.0
-0.3
 0.6
0.1
 1.1
-0.3
 3.8
0.5
 -0.6
-0.6
 0.1
-1.0
 2.4
2.1
 1.8
0.7
 2.9
1.5
48 GATA17 GATA transcription factor 17 820942 At3g16870 2.8 2.5
 2.4
 7980.1
 2.5
 0.3
 0.4
 1.0
 2.6
 1.7
 -0.1
-0.3
 1.1
0.9
 0.4
0.0
 0.7
-0.3
 1.7
0.0
 1.8
1.2
 -0.3
-1.0
 0.7
0.2
 1.6
0.5
 4.1
2.5
 1.9
1.5
49 AT4G39780 Integrase-type DNA-binding superfamily protein 830136 At4g39780 2.8 2.8
 2.1
 645.4
 -1.3
 1.6
 1.0
 1.6
 0.6
 1.6
 0.8
0.5
 1.6
0.7
 1.5
1.2
 1.4
1.2
 2.9
2.4
 -0.1
-0.2
 2.0
1.8
 3.0
1.9
 0.8
0.5
 1.1
0.7
 0.1
-0.4
50 AT5G58680 ARM repeat superfamily protein 835982 At5g58680 2.8 1.8
 3.1
 74.2
 -0.3
 2.2
 0.3
 4.0
 2.0
 1.1
 2.2
-0.5
 0.3
-0.1
 0.8
0.8
 1.9
0.7
 1.8
1.2
 0.1
-0.3
 2.5
1.4
 -0.1
-0.2
 0.3
-0.9
 0.2
-0.3
 -0.8
-1.1
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