Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   LBA1   RNA helicase 
 ath-r.6   LBA1   RNA helicase 
 ath-m.9   LBA1   RNA helicase 
 ath-m.4.notissue   LBA1   RNA helicase 
 ath-m.4.tis   LBA1   RNA helicase 
 ath-m.4.str   LBA1   RNA helicase 
 ath-m.4.hor   LBA1   RNA helicase 
 ath-m.4.bio   LBA1   RNA helicase 
 ath-m.4.lig   LBA1   RNA helicase 
 ath-e.1   LBA1   RNA helicase 
 gma-u.4   100793750   regulator of nonsense transcripts 1 homolog 
 gma-u.4   100795594   regulator of nonsense transcripts 1 homolog 
 ppo-u.4   18096919   regulator of nonsense transcripts 1 homolog 
 ppo-u.4   18094225   regulator of nonsense transcripts 1 homolog 
 mtr-u.4   11438910   regulator of nonsense transcripts 1 homolog 
 sly-u.4   101257199   regulator of nonsense transcripts 1 homolog 
 sly-u.4   101258879   regulator of nonsense transcripts 1 homolog 
 osa-u.4   4343292   regulator of nonsense transcripts 1 homolog 

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Top 50 coexpressed genes to LBA1 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath3018   RNA degradation  6 105 6.59
 ath3008   Ribosome biogenesis in eukaryotes  1 96 -
 ath3013   Nucleocytoplasmic transport  1 103 -
 ath3015   mRNA surveillance pathway  1 119 -
 ath3040   Spliceosome  3 203 -

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ath:LBA1 (RNA helicase) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
LBA1
ath-r.6
for
LBA1
ath-m.9
for
LBA1
ath-m.4.notissue
for
LBA1
ath-m.4.tis
for
LBA1
ath-m.4.str
for
LBA1
ath-m.4.hor
for
LBA1
ath-m.4.bio
for
LBA1
ath-m.4.lig
for
LBA1
ath-e.1
for
LBA1
gma-u.4
for
100793750
gma-u.4
for
100795594
ppo-u.4
for
18096919
ppo-u.4
for
18094225
mtr-u.4
for
11438910
sly-u.4
for
101257199
sly-u.4
for
101258879
osa-u.4
for
4343292
1 KAK HECT ubiquitin protein ligase family protein KAK 830017 At4g38600 11.4 9.6
 10.2
 4.5
 4.0
 3.4
 5.2
 3.2
 2.6
 10.0
 9.7
9.0
 10.7
7.9
 6.9
5.9
 4.1
2.8
 11.3
 6.6
4.2
 6.4
5.5
 3.5
2 NRPB1 RNA polymerase II large subunit 829734 At4g35800 9.9 8.5
 8.7
 7.3
 3.3
 3.6
 4.5
 3.0
 3.1
 6.4
 6.6
6.5
 6.1
6.0
 3.5
 5.1
 6.4
 6.8
 6.1
 3.8
1.4
3 GCT RNA polymerase II transcription mediator 841978 At1g55325 9.2 9.0
 6.9
 275.3
 4.2
 4.0
 0.0
 1.5
 1.0
 8.0
 7.5
6.0
 9.0
7.1
 4.6
3.8
 3.8
2.3
 5.9
 6.7
 7.5
 6.0
4 DCP5 decapping 5 839152 At1g26110 8.8 7.3
 7.9
 2.5
 0.6
 5.5
 3.1
 4.0
 2.8
 5.3
 5.1
4.9
 7.7
4.2
 3.1
1.7
 4.1
2.3
 3.9
 4.3
 3.3
 4.2
3.2
5 RAPTOR1 Regulatory-associated protein of TOR 1 820032 At3g08850 8.7 8.2
 6.8
 18.2
 2.3
 4.4
 3.1
 2.1
 0.9
 9.0
 10.5
5.5
 9.6
6.0
 4.0
3.5
 4.4
3.4
 6.0
 5.8
 6.3
 6.2
5.9
6 AT5G51300 splicing factor-like protein 835204 At5g51300 8.7 7.8
 7.2
 11.2
 1.2
 3.8
 3.9
 3.5
 2.8
 4.7
 5.3
3.3
 5.6
4.9
 2.8
2.6
 2.5
2.4
 3.0
 2.3
 3.6
 1.7
7 SMG7 Telomerase activating protein Est1 832060 At5g19400 8.6 6.0
 8.8
 31.0
 2.1
 3.3
 4.2
 1.2
 4.3
 5.6
 6.7
6.5
 8.9
5.3
 5.2
3.2
 2.6
1.2
 9.9
4.9
 4.5
4.1
 6.4
5.4
 4.8
8 AT1G10390 Nucleoporin autopeptidase 837579 At1g10390 8.5 8.3
 6.4
 7.4
 1.3
 3.7
 4.4
 2.5
 1.7
 6.7
 7.5
7.0
 6.6
5.5
 2.5
2.1
 5.2
2.7
 4.3
-0.4
 4.6
 6.0
 4.1
1.0
9 SUS2 Pre-mRNA-processing-splicing factor 844347 At1g80070 8.2 8.5
 5.7
 489.0
 1.1
 1.2
 3.8
 3.9
 1.1
 7.5
 7.5
6.5
 6.0
5.6
 3.4
 3.2
 5.7
3.4
 6.8
 5.9
 5.3
4.0
10 AT1G02080 transcription regulator 839244 At1g02080 8.1 8.2
 5.8
 14.7
 2.5
 3.1
 3.3
 2.4
 2.8
 7.7
 7.6
7.0
 7.7
5.4
 3.5
2.4
 5.0
4.2
 9.3
 6.0
 8.3
 5.1
0.3
11 AT3G24880 Helicase/SANT-associated, DNA binding protein 822086 At3g24880 8.1 8.7






5.5
 10.3
9.7
 9.2
9.1
 6.2
5.6
 4.5
2.7
 7.2
0.9
 7.2
6.8
 7.1
6.5
 5.0
3.3
12 CHR4 chromatin remodeling 4 834510 At5g44800 8.0 7.6
 6.3
 16.9
 4.5
 3.2
 2.4
 3.0
 0.5
 7.0
 7.5
7.4
 6.2
6.0
 4.6
4.5
 4.8
3.6
 6.4
 4.4
 2.9
 4.6
13 GRV2 DNAJ heat shock N-terminal domain-containing protein 817230 At2g26890 7.9 8.2
 5.5
 64.8
 0.7
 2.0
 3.2
 2.0
 -0.7
 7.0
 8.1
6.4
 9.8
5.2
 6.4
 3.5
 7.3
 5.6
 5.6
 3.9
14 AT5G18230 transcription regulator NOT2/NOT3/NOT5 family protein 831941 At5g18230 7.9 7.4
 6.2
 73.2
 2.1
 2.5
 2.8
 2.1
 0.4
 5.5
 2.9
2.3
 1.9
1.0
 4.3
3.5
 1.1
-0.7
 4.3
 3.1
 4.3
 1.1
15 AT2G48160 Tudor/PWWP/MBT domain-containing protein 819428 At2g48160 7.9 7.7
 6.0
 216.4
 1.2
 2.4
 3.2
 1.0
 1.2
 5.4
 9.4
9.4
 8.8
8.0
 5.2
 2.4
 8.2
1.9
 4.5
 4.7
 5.0
4.8
16 AT3G24870 Helicase/SANT-associated, DNA binding protein 822085 At3g24870 7.8 8.4






5.5
 10.3
9.7
 9.2
9.1
 6.2
5.6
 4.5
2.7
 7.2
0.9
 7.2
6.8
 7.1
6.5
 5.0
3.3
17 AT1G15280 CASC3/Barentsz eIF4AIII binding protein 838095 At1g15280 7.7 6.8
 6.5
 19.3
 3.6
 4.7
 3.4
 3.9
 2.2
 4.4
 7.0
6.9
 10.0
7.7
 4.2
3.7
 3.6
2.7
 5.4
 3.7
3.0
 4.8
4.6
 1.2
18 AT3G50370 uncharacterized protein 824199 At3g50370 7.7 6.2
 7.2
 10.1
 2.5
 3.0
 3.8
 3.1
 0.2
 6.8
 5.7
5.3
 8.8
3.2
 5.9
5.1
 5.4
4.5
 5.5
 6.0
 6.2
 5.7
19 AT3G61690 nucleotidyltransferase 825342 At3g61690 7.7 7.3
 6.1
 156.4
 4.1
 2.3
 2.9
 3.9
 0.3
 5.7
 9.9
9.5
 9.8
9.0
 5.4
4.3
 3.0
2.0
 5.6
 5.1
4.9
 5.9
3.8
 3.6
20 AT3G58560 DNAse I-like superfamily protein 825025 At3g58560 7.7 7.4
 5.9
 421.2
 1.0
 2.1
 2.7
 2.8
 1.2
 4.7
 5.5
4.3
 3.9
3.7
 3.4
2.4
 1.9
1.5
 4.9
3.9
 1.6
1.5
 2.3
1.9
 3.4
2.0
21 CCT RNA polymerase II transcription mediator 827954 At4g00450 7.6 6.9
 6.3
 42.8
 2.2
 3.4
 2.8
 3.1
 1.3
 6.4
 9.2
8.9
 11.3
7.3
 8.0
4.9
 4.2
3.0
 7.0
5.5
 5.7
 8.1
 5.5
2.9
22 AT1G72390 nuclear receptor coactivator 843571 At1g72390 7.6 8.2
 4.9
 2260.7
 2.5
 1.8
 1.3
 1.7
 1.8
 6.5
 6.2
4.7
 7.9
5.6
 5.6
4.9
 3.5
3.2
 5.1
 5.5
 6.0
 4.4
23 AT5G08450 zinc finger CCCH domain protein 830744 At5g08450 7.5 8.7
 4.3
 1885.2
 1.7
 0.2
 3.0
 2.5
 0.8
 6.1
 2.7
2.7
 2.1
2.1
 2.4
1.4
 3.0
2.8
 2.4
0.8
 2.8
 3.0
 3.4
24 NUP1 nuclear pore complex protein 820234 At3g10650 7.5 6.0
 6.9
 251.1
 4.8
 1.8
 2.2
 2.0
 1.7
 5.5
 9.5
8.3
 8.7
6.0
 7.4
4.2
 2.6
2.4
 4.3
2.9
 5.2
4.5
 5.8
5.4
 3.9
25 AT5G07980 dentin sialophosphoprotein-like protein 830692 At5g07980 7.4 7.8






6.8
 8.1
7.5
 6.4
5.6
 6.1
5.1
 4.2
4.2
 5.6
5.0
 7.0
6.3
 6.8
6.4
 6.1
2.3
26 EMB2016 embryo defective 2016 819736 At3g05680 7.4 8.2






7.6
 6.8
6.2
 7.2
5.8
 5.1
 3.2
 5.7
 6.1
 6.2
 4.5
27 GTA2 global transcription factor group A2 826391 At4g08350 7.4 8.5






5.3
 8.5
8.1
 8.7
8.2
 3.9
2.7
 4.7
3.0
 4.5
 5.0
 8.6
 7.4
28 G2484-1 G2484-1 protein 827445 At4g17330 7.4 7.9
 4.9
 85.7
 1.5
 3.7
 3.3
 1.8
 0.7
 6.2
 6.3
6.2
 5.1
4.7
 4.9
4.9
 5.3
4.5
 7.1
7.0
 7.4
 6.0
 7.1
29 CPL1 C-terminal domain phosphatase-like 1 828254 At4g21670 7.3 7.7






4.4
 5.1
4.9
 7.7
5.8
 3.2
1.1
 5.1
2.7
 6.8
 5.3
 5.9
 3.5
1.5
30 emb1507 U5 small nuclear ribonucleoprotein helicase 838690 At1g20960 7.3 7.7
 5.0
 220.0
 1.0
 0.7
 4.6
 2.6
 1.8
 6.1
 7.1
6.5
 6.6
3.8
 2.8
1.0
 5.9
2.2
 4.8
0.9
 5.0
1.7
 6.2
0.8
 4.6
31 TPR2 TOPLESS-related 2 820936 At3g16830 7.2 6.8
 5.7
 141.5
 1.7
 2.5
 2.3
 2.3
 1.4
 4.7
 5.0
3.1
 4.9
3.6
 1.8
1.7
 3.6
1.5
 7.0
4.5
 2.9
 3.8
 3.9
32 AT2G44710 RNA-binding (RRM/RBD/RNP motifs) family protein 819079 At2g44710 7.2 6.5
 5.9
 140.7
 1.3
 2.6
 1.7
 0.9
 3.1
 4.9
 7.0
5.9
 7.1
6.1
 3.4
2.4
 2.5
1.8
 4.4
3.6
 4.4
4.3
 5.7
4.5
 3.1
33 AT5G15680 ARM repeat superfamily protein 831422 At5g15680 7.0 7.3
 4.9
 77.2
 2.4
 2.4
 2.2
 2.7
 0.5
 6.7
 7.0
6.0
 6.4
5.5
 3.0
 5.0
 5.9
 7.7
4.9
 7.1
3.5
 3.7
34 VCR varicose-like protein 820529 At3g13290 6.8 7.3






6.0
 7.7
5.1
 7.7
5.0
 3.2
3.0
 3.6
3.4
 6.3
4.3
 4.6
4.5
 5.5
2.4
 6.4
3.4
35 RBR1 retinoblastoma-related 1 820408 At3g12280 6.8 6.2
 5.5
 2042.7
 2.4
 0.4
 2.8
 1.4
 0.2
 5.6
 4.8
4.5
 5.6
5.4
 2.1
 -0.0
 3.8
 1.8
 1.4
 -0.1
36 AT1G24300 GYF domain-containing protein 839046 At1g24300 6.8 7.3






5.6
 10.9
7.9
 8.0
6.4
 6.1
5.7
 3.6
3.5
 5.6
 6.5
5.9
 7.6
7.1
 4.5
37 EMB1135 RING/FYVE/PHD zinc finger superfamily protein 844273 At1g79350 6.7 6.8
 4.7
 63.2
 2.9
 2.5
 3.3
 3.1
 -0.7
 6.5
 7.0
5.2
 6.5
6.3
 4.2
3.7
 3.3
2.5
 3.8
 6.6
 4.9
 4.7
3.5
38 AT1G23230 mediator of RNA polymerase II transcription subunit 838932 At1g23230 6.7 6.6
 4.9
 280.3
 3.3
 2.2
 2.7
 1.7
 1.0
 5.5
 6.0
 5.8
 4.1
 2.4
 4.0
 4.9
 5.0
 3.6
39 EMB2773 PHD finger family protein 831407 At5g15540 6.6 7.3
 4.2
 762.2
 3.1
 1.8
 1.8
 1.9
 -0.4
 5.3
 7.4
7.2
 7.8
6.7
 5.2
 3.2
 4.9
 7.0
 3.6
 5.9
40 AT3G11960 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 820369 At3g11960 6.6 5.5
 5.8
 153.0
 1.8
 2.6
 1.4
 1.6
 1.2
 4.9
 6.9
4.5
 6.9
3.6
 3.9
 2.9
 5.1
 5.9
 7.1
 5.0
41 AT3G13990 dentin sialophosphoprotein, putative (DUF1296) 820613 At3g13990 6.6 7.2






4.8
 3.6
3.2
 3.4
2.1
 3.3
1.9
 1.8
1.4
 6.0
 2.4
 2.2
 4.5
42 XRN3 5'-3' exoribonuclease 3 843900 At1g75660 6.6 5.6
 5.8
 131.6
 2.3
 3.9
 3.2
 2.2
 0.1
 4.2
 4.9
4.4
 5.3
4.3
 5.1
1.0
 1.3
0.9
 3.7
-0.1
 4.1
3.7
 5.2
2.8
 3.5
43 EIF4G eukaryotic translation initiation factor 4G 825194 At3g60240 6.5 7.3
 3.9
 242.8
 2.0
 1.7
 3.1
 2.2
 0.1
 7.9
 8.6
7.1
 5.8
4.5
 5.3
4.5
 2.0
2.0
 7.5
3.9
 5.3
0.7
 6.0
0.7
 4.4
44 AT2G25320 TRAF-like family protein 817070 At2g25320 6.5 6.9






4.6
 6.0
4.8
 8.9
6.8
 5.2
3.2
 3.6
2.4
 6.9
 5.3
 6.4
 2.7
45 SE C2H2 zinc-finger protein SERRATE (SE) 817252 At2g27100 6.5 4.9
 6.2
 746.7
 1.5
 1.0
 3.7
 1.5
 2.6
 3.9
 6.6
5.5
 5.3
4.5
 2.0
1.4
 5.0
4.6
 3.6
1.4
 3.3
 7.8
 5.1
1.8
46 AT3G61240 DEA(D/H)-box RNA helicase family protein 825296 At3g61240 6.5 5.7
 5.5
 388.0
 1.0
 1.7
 3.1
 3.2
 2.1
 5.9
 5.9
5.7
 4.1
3.5
 2.6
2.5
 1.2
0.4
 3.4
2.4
 3.6
1.8
 5.2
3.9
 2.9
1.7
47 AT3G33530 Transducin family protein / WD-40 repeat family protein 823149 At3g33530 6.4 5.3
 5.8
 48.1
 2.0
 3.4
 1.6
 2.4
 -0.3
 5.4
 2.7
 3.1
 3.4
 1.4
 4.5
 3.2
 3.1
 3.2
48 AT3G07660 flocculation protein (DUF1296) 819957 At3g07660 6.3 4.6
 6.3
 50.2
 3.7
 1.7
 2.7
 4.1
 0.8
 3.9
 5.6
4.9
 4.3
3.9
 3.8
2.2
 3.2
2.1
 2.7
 4.6
3.6
 5.0
4.2
 1.2
49 MBD9 methyl-CPG-binding domain 9 821132 At3g01460 6.3 5.6
 5.4
 25.0
 2.4
 3.6
 1.9
 1.7
 0.0
 5.0







50 TIC time for coffee 821807 At3g22380








4.4
4.1
 4.1
3.1
 5.1
3.1
 3.5
3.3
 5.5
 4.2
 3.8
 5.1
The preparation time of this page was 1.7 [sec].