Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4  AT1G55360  tRNA-splicing ligase (DUF239) 
 ath-r.6  AT1G55360  tRNA-splicing ligase (DUF239) 
 ath-m.9  AT1G55360  tRNA-splicing ligase (DUF239) 
 ath-m.4.notissue  AT1G55360  tRNA-splicing ligase (DUF239) 
 ath-m.4.tis  AT1G55360  tRNA-splicing ligase (DUF239) 
 ath-m.4.str  AT1G55360  tRNA-splicing ligase (DUF239) 
 ath-m.4.hor  AT1G55360  tRNA-splicing ligase (DUF239) 
 ath-m.4.bio  AT1G55360  tRNA-splicing ligase (DUF239) 
 ath-m.4.lig  AT1G55360  tRNA-splicing ligase (DUF239) 
 ath-e.1  AT1G55360  tRNA-splicing ligase (DUF239) 
 ath-u.4  AT5G56530  tRNA-splicing ligase (DUF239) 
 ath-u.4  AT3G13510  carboxyl-terminal peptidase, putative (DUF239) 
 gma-u.4  100809342  uncharacterized LOC100809342 
 gma-u.4  100813504  uncharacterized LOC100813504 
 gma-u.4  100776799  uncharacterized LOC100776799 
 ppo-u.4  18095018  uncharacterized LOC18095018 
 ppo-u.4  7461352  uncharacterized LOC7461352 
 ppo-u.4  7483235  uncharacterized LOC7483235 
 mtr-u.4  11411399  uncharacterized LOC11411399 
 mtr-u.4  11418598  uncharacterized LOC11418598 
 sly-u.4  101253614  uncharacterized LOC101253614 
 sly-u.4  101264758  uncharacterized LOC101264758 
 osa-u.4  4342683  uncharacterized LOC4342683 
 osa-u.4  4334507  uncharacterized LOC4334507 
 osa-u.4  4343684  uncharacterized LOC4343684 

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Top 50 coexpressed genes to AT1G55360 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath100   Steroid biosynthesis  3 33 4.10
 ath511   Other glycan degradation  1 19 -
 ath513   Various types of N-glycan biosynthesis  1 32 -
 ath270   Cysteine and methionine metabolism  1 124 -
 ath520   Amino sugar and nucleotide sugar metabolism  1 133 -

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ath:AT1G55360 (tRNA-splicing ligase (DUF239)) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Condition specific* Reference

ath-u.4
for
AT1G55360


ath-r.6
for
AT1G55360


ath-m.9
for
AT1G55360


ath-m.4.notissue
for
AT1G55360


ath-m.4.tis
for
AT1G55360


ath-m.4.str
for
AT1G55360


ath-m.4.hor
for
AT1G55360


ath-m.4.bio
for
AT1G55360


ath-m.4.lig
for
AT1G55360


ath-e.1
for
AT1G55360


ath-u.4
for
AT5G56530


ath-u.4
for
AT3G13510


gma-u.4
for
100809342


gma-u.4
for
100813504


gma-u.4
for
100776799


ppo-u.4
for
18095018


ppo-u.4
for
7461352


ppo-u.4
for
7483235


mtr-u.4
for
11411399


mtr-u.4
for
11418598


sly-u.4
for
101253614


sly-u.4
for
101264758


osa-u.4
for
4342683


osa-u.4
for
4334507


osa-u.4
for
4343684

1 AT3G13510 carboxyl-terminal peptidase, putative (DUF239) 820553 At3g13510 8.0 7.7
6.1
2.8
3.3
4.3
1.4
2.8
0.5
4.6
5.6
3.9
8.0
5.6
10.4
2.6
12.6
1.9
10.4
3.6
2.5
1.0
7.1
1.0
7.1
2.5
5.0
5.0
3.6
3.6
2.4
1.9
4.6
2.4
4.6
1.9
2 AT5G01090 Concanavalin A-like lectin family protein 831840 At5g01090 6.2 6.5
4.3
3.5
2.8
4.0
2.3
4.8
2.0
3.4
4.1
3.6
5.5
5.1
2.2
1.2
3.3
2.9
1.8
1.5
1.4
1.4
4.0
3.8
3.6
3.5
2.8
1.5
2.3
1.2
4.4
3.7
3.0
2.7
2.2
3 CSLC5 Cellulose-synthase-like C5 829286 At4g31590 6.2 5.7
5.0
101.1
0.8
3.4
2.3
3.0
2.0
5.2
2.2
0.4
3.3
2.9
0.7
0.7
2.6
2.5
0.8
0.7
0.8
0.1
2.1
2.0
1.4
1.4
2.6
2.5
3.3
1.7
1.1
-0.4
1.6
1.2
0.9
0.7
1.7
1.6
2.3
2.1
4 AT2G05790 O-Glycosyl hydrolases family 17 protein 815130 At2g05790 5.8 6.1
3.9
30.5
3.0
2.8
1.2
2.7
2.2
3.0
3.3
0.9
4.7
0.2
1.0
0.7
2.8
2.0
1.7
1.5
2.6
0.4
4.8
2.0
2.5
0.9
3.3
1.0
1.1
0.0
1.2
-0.1
0.5
-0.0
1.7
2.6
3.2
5 AT2G27060 Leucine-rich repeat protein kinase family protein 817248 At2g27060 5.7 6.1
3.7
30.8
2.5
3.5
3.6
2.5
-0.3
3.6
1.6
2.0
1.3
-0.8
0.8
0.6
1.0
-0.4
0.4
-0.6
0.8
0.4
-0.2
-0.5
1.9
2.0
2.1
4.1
0.8
1.4
1.4
6 AT3G14240 Subtilase family protein 820644 At3g14240 5.6 6.0
3.7
28.7
4.3
3.3
1.5
2.4
2.1
2.5
2.6
3.6
1.5
0.7
2.4
2.3
2.0
0.4
2.1
1.6
3.0
1.2
3.8
0.1
1.8
3.9
1.6
2.4
0.9
1.8
1.1
7 DWF1 cell elongation protein / DWARF1 / DIMINUTO (DIM) 821519 At3g19820 5.4 4.8
4.6
29.1
2.8
3.3
1.3
2.4
1.4
4.1
3.5
2.5
1.3
0.7
-0.4
-0.7
1.9
0.5
1.4
0.7
2.5
2.0
1.9
0.8
1.6
0.3
2.4
0.7
2.5
-0.8
1.6
2.5
1.2
8 RKL1 receptor-like kinase 1 841269 At1g48480 5.3 5.0
4.2
47.7
2.3
4.2
2.4
2.4
1.7
2.1
2.4
1.5
6.7
4.0
2.1
1.6
1.8
1.8
4.0
2.8
1.1
0.9
3.8
2.4
2.3
1.8
2.1
1.9
4.5
2.0
1.7
1.1
3.7
3.4
0.6
0.4
2.2
2.2
1.5
0.6
9 SMO1-2 sterol C4-methyl oxidase 1-2 828374 At4g22756 5.1 4.9
3.9
8.0
1.7
3.9
1.1
2.4
3.6
2.8
1.9
0.5
2.1
1.0
0.9
0.4
2.7
1.5
1.1
-1.5
1.7
-0.4
1.2
0.3
0.7
0.0
0.4
-0.4
0.9
3.0
1.0
1.6
1.7
10 AT1G27190 Leucine-rich repeat protein kinase family protein 839608 At1g27190 5.0 4.2
4.5
45.8
3.7
2.8
1.7
2.2
1.5
1.5
2.8
0.9
2.0
0.5
1.0
0.8
0.3
-0.0
1.8
1.3
1.6
1.0
1.7
1.4
3.5
1.8
2.5
0.9
0.2
0.1
1.1
0.4
-0.9
-0.2
0.5
11 PIN7 Auxin efflux carrier family protein 838916 At1g23080 5.0 4.3
4.4
116.5
0.6
2.0
0.9
3.1
2.3
2.0
2.0
1.7
1.6
1.2
1.2
0.4
0.5
0.5
1.8
0.7
0.8
0.2
1.0
0.4
0.6
0.1
1.3
0.6
0.8
0.2
-0.2
-0.3
1.7
1.2
0.2
1.1
0.8
12 AT3G28040 Leucine-rich receptor-like protein kinase family protein 822428 At3g28040 5.0 4.6
4.1
19.8
1.6
3.1
1.3
3.9
-0.1
3.8
0.9
1.9
3.2
1.2
3.4
2.6
3.0
1.8
2.3
1.9
1.2
-0.2
0.2
-0.3
2.1
2.2
1.2
1.9
1.5
0.9
3.0
13 FRA1 P-loop containing nucleoside triphosphate hydrolases superfamily protein 834833 At5g47820 5.0 5.4
3.2
200.2
1.6
3.9
1.0
1.4
1.3
2.3
0.8
3.4
2.0
0.5
1.3
0.9
2.8
1.1
0.7
0.6
2.8
2.4
1.4
1.2
2.4
0.9
2.9
2.4
0.8
2.3
2.1
1.5
1.9
14 HEXO2 beta-hexosaminidase 2 837064 At1g05590 5.0 5.1
3.5
26.2
1.8
3.9
2.6
2.1
1.5
2.8
1.2
2.8
1.2
0.3
0.4
-0.7
1.2
0.5
1.0
2.6
1.5
1.0
0.5
-0.8
-1.3
0.2
0.2
-0.4
15 AT3G54080 Concanavalin A-like lectin family protein 824575 At3g54080 5.0 4.0
4.6
32.7
3.9
3.3
0.8
2.5
3.1
2.1
4.1
3.6
5.5
5.1
2.2
1.2
3.3
2.9
1.8
1.5
1.4
1.4
4.0
3.8
3.6
3.5
2.8
1.5
2.3
1.2
4.4
3.7
3.0
2.7
2.2
16 PDLP3 plasmodesmata-located protein 3 817896 At2g33330 4.9 4.3
4.2
92.7
1.6
2.6
0.7
2.2
0.4
2.9
1.7
1.5
3.3
2.4
1.5
0.9
2.1
1.6
2.2
1.4
2.8
2.7
2.9
2.1
2.8
2.3
1.2
0.8
2.1
-0.3
2.3
2.2
2.3
1.9
0.7
0.3
0.2
17 STE1 sterol 1 820679 At3g02580 4.9 5.1
3.3
301.7
1.0
2.9
-0.2
1.0
0.7
2.0
-0.0
0.9
1.6
-0.0
-0.4
-0.4
1.3
-1.8
0.8
-0.7
-0.4
-0.4
-0.2
-1.0
1.7
0.8
0.9
-0.5
2.2
-1.0
0.2
3.0
1.4
18 AT3G09035 Concanavalin A-like lectin family protein 820056 At3g09035 4.9 5.2







1.8
4.1
3.6
5.5
5.1
2.2
1.2
3.3
2.9
1.8
1.5
1.4
1.4
4.0
3.8
3.6
3.5
2.8
1.5
2.3
1.2
4.4
3.7
3.0
2.7
2.2
19 AT5G23280 TCP family transcription factor 832392 At5g23280 4.7 5.0







1.2
1.3
-0.1
2.8
0.1
2.5
1.7
1.4
1.4
1.6
1.6
2.9
2.0
2.3
3.0
1.1
4.4
2.5
3.1
2.9
3.4
1.1
1.2
0.2
1.9
1.0
3.6
1.5
20 QUA3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 828020 At4g00740 4.7 3.6
4.5
153.0
2.9
1.6
2.4
2.9
1.2
3.1
1.1
2.6
1.1
0.6
1.5
1.4
1.0
1.0
0.3
0.2
-0.3
1.4
0.6
1.5
0.5
-0.4
3.5
1.1
0.8
0.0
21 ROPGAP3 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 819283 At2g46710 4.6 4.3
3.6
78.5
1.5
2.3
3.1
3.4
2.9
1.8
2.0
1.4
2.2
1.9
3.9
2.4
2.5
1.8
4.2
3.1
1.2
0.7
1.8
1.7
1.4
1.2
3.0
1.0
2.1
0.8
1.3
1.0
2.3
2.1
2.7
1.3
2.1
1.1
1.9
1.1
22 NIK3 NSP-interacting kinase 3 842374 At1g60800 4.6 4.5
3.5
37.0
3.2
3.0
2.3
2.4
-0.6
0.5
1.7
3.7
2.9
2.3
1.0
0.5
2.3
0.8
2.1
1.2
3.3
3.1
1.4
1.3
0.8
2.1
3.1
1.9
-0.1
-0.2
1.4
1.7
0.9
23 AT1G15410 aspartate-glutamate racemase family 838111 At1g15410 4.5 4.2
3.7
15.3
0.2
2.5
0.8
3.4
2.8
3.9
0.1
2.3
1.4
1.4
1.2
0.1
1.6
1.2
1.2
0.3
0.9
1.3
1.2
1.7
1.7
0.3
0.6
-0.0
-0.3
1.7
24 AT3G62110 Pectin lyase-like superfamily protein 825384 At3g62110 4.5 3.6
4.2
134.4
1.5
2.2
0.8
3.0
1.7
2.4
2.2
2.6
1.1
1.1
2.0
1.9
1.2
0.9
2.6
1.9
1.4
1.1
1.1
1.0
2.4
1.5
5.1
1.7


1.1
1.0
2.1
1.8
2.0
0.8
25 MCA1 PLAC8 family protein 829747 At4g35920 4.4 4.5
3.2
493.4
1.5
5.2
0.7
2.9
0.6
3.8
1.9
0.4
3.1
-0.6
1.3
0.8
2.9
2.8
1.6
1.3
0.5
1.4
2.0
3.0
-0.5
4.1
-0.3
1.4
1.3
0.7
2.7
2.5
26 CDI Nucleotide-diphospho-sugar transferases superfamily protein 842806 At1g64980 4.4 4.1
3.5
3152.9
-0.4
0.5
2.1
0.9
0.0
5.9
-1.0
1.6
-0.4
-1.2
0.5
0.2
-0.9
-1.6
0.3
-0.9
0.3
-1.4
-1.2
-1.5
0.7
0.7
2.2
1.5
-0.8
-1.1
1.6
-1.2
0.5
-0.2
-0.3
-1.4
-0.4
-0.6
27 RTV1 uncharacterized protein 841372 At1g49480 4.3 4.1
3.4
34.1
4.1
4.9
1.3
1.5
1.7
1.2
3.1
2.9
4.2
2.9
0.5
0.3
1.1
-0.1
1.5
1.2
0.5
0.4
1.4
1.0
1.6
1.2
1.8
0.7
1.2
1.1
1.5
1.2
0.5
-0.8



28 CYSD1 cysteine synthase D1 819654 At3g04940 4.3 4.5
2.9
1.7
2.7
3.7
1.4
3.5
0.5
3.4
1.7
0.9
3.9
1.2
1.2
0.8
1.0
0.9
1.4
0.4
1.4
1.2
0.0
-0.3
0.7
0.4
0.1
-0.0
0.7
0.4
2.1
0.5
2.5
1.5
1.1
0.6
0.2
-0.7
-0.1
-0.2
29 AT5G42620 metalloendopeptidase / zinc ion binding protein 834269 At5g42620 4.3 4.1
3.3
85.8
1.4
3.6
1.5
1.3
1.4
1.3
2.5
2.6
1.5
0.6
0.7
-0.1
2.1
1.0
1.1
0.2
1.4
-0.2
-0.3
-0.6
0.9
-1.5
2.6
0.1
1.0
2.1
1.0
1.6
1.1
30 EXPA6 expansin A6 817444 At2g28950 4.2 3.7
3.6
55.9
1.3
4.7
1.4
2.8
0.3
2.8
1.9
1.8
3.8
2.0
0.4
0.4
1.9
1.8
1.3
0.9
1.9
1.3
3.6
3.2
3.9
2.8
1.9
1.1
1.1
0.2
2.5
0.8
1.6
1.3
1.9
0.3
2.3
0.3
1.5
0.3
31 AT1G05150 Calcium-binding tetratricopeptide family protein 839312 At1g05150 4.1 3.5
3.7
300.2
1.0
3.6
1.4
2.2
2.0
1.8
1.8
1.2
2.5
1.8
0.5
0.4
1.4
1.2
0.6
0.3
2.2
2.0
1.9
1.2
2.4
0.7
3.2
4.3
0.7
0.7
1.0
1.0
2.1
32 RLK902 receptor-like kinase 902 821053 At3g17840 4.1 4.4
2.7
412.6
2.2
2.3
1.6
1.3
-0.1
0.9
2.4
1.5
6.7
4.0
2.1
1.6
1.8
1.8
4.0
2.8
1.1
0.9
3.8
2.4
2.3
1.8
2.1
1.9
4.5
2.0
1.7
1.1
3.7
3.4
0.6
0.4
2.2
2.2
1.5
0.6
33 AT1G72480 Lung seven transmembrane receptor family protein 843580 At1g72480 4.1 4.2
2.9
375.5
1.5
2.7
1.0
2.0
1.2
2.2
2.1
2.8
0.7
-0.4
1.8
1.0
-0.5
-0.8
-0.0
-0.7
1.2
0.6
0.5
-0.8
1.8
1.1
0.2
-1.1
2.1
0.2
-0.4
0.7
0.2
34 ABIL1 ABI-1-like 1 819230 At2g46225 4.0 3.6
3.4
12.3
2.1
5.5
2.0
2.8
0.9
2.6
1.5
2.2
0.0
0.0
0.8
0.6
-0.4
-1.0
0.6
-0.3
0.5
-0.3
0.7
-0.2
2.1
-0.6
1.3
0.4
2.0
0.7
1.3
0.1
3.5
-0.0
3.2
0.5
35 AT1G69420 DHHC-type zinc finger family protein 843274 At1g69420 4.0 3.7
3.3
55.3
3.8
2.7
2.6
2.5
-0.3
2.9
2.3
4.2
3.2
2.2
1.8
1.2
3.1
3.0
2.5
-0.8
3.5
1.0
2.9
1.1
3.0
2.0
4.1
0.9
0.8
1.7
2.2
2.2
3.7
3.1
2.1
1.3
36 AT2G18910 hydroxyproline-rich glycoprotein family protein 816407 At2g18910 4.0 3.8
3.1
112.6
2.0
3.5
0.6
1.3
2.6
1.4
0.8
0.9
1.8
1.4
0.7
0.2
0.9
-0.1
1.2
0.5
0.9
0.6
0.7
-0.3
1.2
0.5
0.2
1.9
0.6
1.2
0.5
37 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 828479 At4g23790 4.0 3.9







1.4
1.4
0.0
1.6
1.3
1.3
1.0
1.1
0.9
0.8
0.2
0.8
0.5
0.5
0.3
1.3
0.8
3.1
0.7
1.3
0.8
1.6
0.2
2.4
1.7
0.8
0.8
2.0
-0.3
1.7
-1.1
38 PP2C52 Protein phosphatase 2C family protein 827930 At4g03415 4.0 4.5







2.0
2.5
0.2
3.3
0.6
2.9
1.5
0.0
-0.1
4.8
2.3
1.9
0.8
1.3
-0.9
1.4
-0.4
1.6
-0.8
-0.2
-1.3
0.8
-0.0
1.5
-0.0
-0.3
0.0
-0.4
39 AT3G05100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 819672 At3g05100 4.0 3.7
3.3
17.0
0.5
4.3
1.2
2.7
2.2
4.5
1.1
2.2
2.4
0.6
1.9
1.9
1.2
0.7
1.5
0.2
0.5
0.3
0.2
-0.3
0.3
0.8
0.4
1.3
0.6
0.9
-0.5
40 ARF18 auxin response factor 18 825356 At3g61830 4.0 3.4
3.5
5950.4
1.3
0.4
0.5
2.1
1.0
4.0
2.3
1.3
3.1
2.3
2.5
2.5
1.3
0.9
4.8
2.7
1.4
1.3
1.4
1.2
2.2
0.9
1.5
1.1
1.9
1.1
1.5
0.5
-0.0
-0.7



41 BAM1 Leucine-rich receptor-like protein kinase family protein 836699 At5g65700 4.0 4.0
2.8
12.5
4.4
2.9
1.0
4.9
1.9
2.9
4.2
3.4
5.1
3.1
2.9
2.5
3.8
3.6
4.2
3.4
1.9
1.7
2.9
0.8
2.6
1.6
4.8
4.4
3.8
3.1
2.7
2.1
2.5
0.4
3.2
2.7
3.3
3.2
2.1
1.7
42 AT3G15480 fiber (DUF1218) 820787 At3g15480 3.9 4.0
2.9
881.2
2.2
1.5
1.4
1.5
0.8
1.5
1.2
0.8
2.2
-0.6
1.1
1.0
2.7
2.6
0.3
-1.2
0.3
0.0
1.2
0.1
1.6
0.5
1.7
1.6
0.9
0.3
1.2
-1.5
-0.6
1.5
0.3
43 AT5G56530 tRNA-splicing ligase (DUF239) 835754 At5g56530 3.9 4.3







3.7
5.6
3.9
8.0
5.6
10.4
2.6
12.6
1.9
10.4
3.6
2.5
1.0
7.1
1.0
7.1
2.5
5.0
5.0
3.6
3.6
2.4
1.9
4.6
2.4
4.6
1.9
44 AT3G56370 Leucine-rich repeat protein kinase family protein 824804 At3g56370 3.9 4.3
2.6
96.5
2.8
2.7
1.3
2.2
0.1
2.5
2.7
2.3
5.9
2.1
2.7
2.5
1.0
0.4
4.1
2.6
1.1
1.0
4.5
3.9
3.0
2.4
3.6
1.6
1.5
1.1
1.8
1.6
0.9
0.4
3.6
2.4
3.0
1.5
2.4
1.3
45 PDCB1 plasmodesmata callose-binding protein 1 836234 At5g61130 3.9 4.7
2.0
76.0
2.5
2.3
0.1
2.2
1.2
3.6
2.2
2.0
4.9
3.2
2.2
1.8
1.9
1.8
2.4
2.0
1.7
1.4
4.8
2.8
3.8
2.0
3.8
3.6
1.7
1.4
3.2
2.6
2.8
2.0
2.0
1.6
2.0
0.7
0.9
0.3
46 AT3G14220 GDSL-like Lipase/Acylhydrolase superfamily protein 820640 At3g14220 3.8 3.5
3.1
27.5
2.8
2.7
0.4
2.7
1.4
1.1
0.5
1.3













47 HHP3 heptahelical protein 3 816949 At2g24150 3.8 3.6
3.0
2.6
2.7
4.3
-0.0
3.3
0.9
1.1
0.2
-0.2
2.0
0.1
0.9
-0.2
1.6
1.4
0.5
0.5
1.9
2.4
1.4
-0.9
-0.1
1.1
0.2
1.2
0.8
0.6
0.2
-0.2
-0.7
-0.1
-0.3
48 AT5G51560 Leucine-rich repeat protein kinase family protein 835230 At5g51560 3.8 4.3
2.3
132.3
2.3
2.7
2.5
1.8
0.7
2.2
2.2
1.3
4.2
4.0
2.6
1.1
0.9
0.6
2.4
2.2
1.5
1.5
2.9
2.2
2.7
2.1
4.9
1.1
2.0
1.1
1.9
1.3
0.7
-0.6
1.1
1.5
0.3
49 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 841582 At1g51570 3.8 4.3
2.3
54.4
3.8
2.7
0.9
2.3
0.8
1.1
2.6
2.3
3.7
1.9
2.9
2.3
2.1
1.9
5.0
2.3
0.9
0.6
4.1
3.2
1.8
1.6
4.6
2.8
2.9
1.0
2.0
0.9
1.2
0.3
2.0
2.0
2.5
0.7
1.4
0.7
50 AT1G79720 Eukaryotic aspartyl protease family protein 844311 At1g79720








0.4
0.5
1.9
1.3
2.7
1.7
1.7
1.0
3.7
0.8
0.7
0.1
0.7
0.6
2.3
2.4
1.4
1.2
3.5
1.4
2.8
0.3
2.2
1.9
2.5
2.1
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